Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq4 89.7 6e-13 >seq4 Length=12062019 Score = 89.7 bits (98), Expect = 6e-13 Identities = 160/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 10205 AGTAAAGTTCATCCTCTTTGTCAATCTCAACCACACAATCGCTCGTGGGATAAGAAACAC 10264 |||| || ||| | || |||| | | | | | |||| || || || || ||||||| Sbjct 8093310 AGTAGAGATCACCTTCCTTGTGAGTGTGGATCTCACAGTCTGAGGTCGGGTATGAAACAC 8093369 Query 10265 AGGTCAGAAGGAAACCAGCATCGATCTGGTCATCATCAAGGAACGATTGATCGCTTTGAT 10324 | ||||| | | || | || || || | |||||||||||| || || ||||| Sbjct 8093370 AAGTCAGCACATATCCCTCCTCCATTTGTTTATCATCAAGGAAGGAACCGTCAGATTGAT 8093429 Query 10325 CTACCGTACCCGAGATGAGTTTGCCTGCACAACTCGAACAGGCACCAGCTCGGCACGAGT 10384 | || | ||| || || | || || ||||| | || || || ||||| | ||| || | Sbjct 8093430 CCACTGAACCTGAAATTATCTTCCCAGCACATGTGGAGCAAGCTCCAGCCCTGCAAGAAT 8093489 Query 10385 AGTTGAGGTCAATGCCTGCTTCTTCAGCAGCATCCAGAATGTACTGATCGTCAG 10438 || ||||||| ||||| || ||||||||||| | ||||| | ||| |||| Sbjct 8093490 AGGGCAGGTCAACTCCTGCCTCCTCAGCAGCATCTAAGATGTATTTATCATCAG 8093543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622077565174560