Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq14 102 6e-17 seq4 93.3 3e-14 seq10 87.8 1e-12 >seq14 Length=6982396 Score = 102 bits (112), Expect = 6e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || || || ||||| ||||| |||||| | | |||| |||||||| ||||| ||||| Sbjct 1119826 TCCTTCTGAATATTGTAATCAGCCAAAGTCCTTCCATCTTCCAATTGCTTCCCAGCAAAA 1119885 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || || | |||||||| | || | ||||| ||||| || ||| |||| | Sbjct 1119886 ATCAACCTTTGCTGATCTGGTGGAATCCCTTCCTTGTCCTGAATCTTTGCCTTAACATTA 1119945 Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708 | | || || | ||| ||||| ||||||||||| ||||| || || | ||| || ||| Sbjct 1119946 TCAATCGTATCCGAGCTCTCCACCTCCAAAGTAATGGTTTTCCCTGTCAGAGTCTTGACG 1120005 Query 39709 AAGATCTGCAT 39719 || |||||||| Sbjct 1120006 AAAATCTGCAT 1120016 >seq4 Length=12062019 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 ||||| || | ||| ||||||| || | ||| ||| ||||| ||||| ||||| || Sbjct 4154447 CCGCCACGGAGACGGAGTACCAGGTGGAGAGTCGATTCCTTTTGGATATTGTAATCCGCA 4154388 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | || | || || | ||| || ||| | || || || ||||| ||||| | || Sbjct 4154387 AGGGTTCGGCCGTCTTCAAGTTGCTTGCCGGCGAAGATCAAGCGCTGTTGATCAGGAGGA 4154328 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671 | |||||| ||||| || || || | ||| | | | ||||||| ||| ||||| Sbjct 4154327 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCTGAGCTCTCCAC 4154269 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | || || ||||| || ||||| ||||| |||||||||||||| Sbjct 4154268 CTCGAGGGTGATGGTTTTGCCGGTTAAGGTTTTCACGAAGATCTGCAT 4154221 >seq10 Length=8461613 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 ||||| || || |||||||| || ||| | |||| ||||||||||||||| |||| Sbjct 2238603 TCTTTCTGAATGTTATAATCAGCTAAAGTCCTCCCATCCTCCAATTGTTTCCCGGCAAAG 2238662 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || | | |||||||| | ||| | ||||| || || || ||| || | | Sbjct 2238663 ATAAGCCTTTGCTGATCTGGGGGGATTCCTTCCTTATCCTGAATCTTTGCCTTGACGTTA 2238722 Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708 | | ||| || | |||||||| ||||| || |||||||| || || || || || || Sbjct 2238723 TCGATTGTATCCGAACTTTCCACCTCCAAGGTGATTGTTTTTCCAGTCAAGGTCTTGACA 2238782 Query 39709 AAGATCTGCAT 39719 || |||||||| Sbjct 2238783 AAAATCTGCAT 2238793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347343885314042