Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1 156 5e-33 seq26 96.9 4e-15 seq19 86.0 8e-12 >seq1 Length=15579451 Score = 156 bits (172), Expect = 5e-33 Identities = 294/423 (70%), Gaps = 12/423 (3%) Strand=Plus/Minus Query 15917 ATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTA---TC 15973 |||||| ||||| | || || ||||| || || |||| |||||||| |||| || Sbjct 14793584 ATCAAGAATATCTGCCCGGTTAGTTGCTGCTATTACAATGATACCTGT---GTTACCCTC 14793528 Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGC-TG 16032 |||||||||||| || |||||||||||||||| |||||| |||| |||||| ||| | Sbjct 14793527 AAAACCATCCATTTCAGTCAAAAGCTGGTTAAGAGTTTGCTCCCTTTCATCGTTCCCACC 14793468 Query 16033 GCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092 | || ||||| | | |||| ||| || |||||||| ||||| | ||||| || | Sbjct 14793467 ACCTA-TACCAGTTCCTCTTTGCCGTCCAACAGCATCAATTTCATCCACAAAGACAATAC 14793409 Query 16093 ATGGTTGATT-TTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCA 16151 | || ||| | | | | ||| ||| ||||| || || || ||| || |||||| Sbjct 14793408 AGGGGGCATTCTCCTTGGCCTTCTTGAAA-AGATCACGAACTCGAGAGGCACCAACACCA 14793350 Query 16152 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACC 16210 |||||||| || ||||| | | | ||| || | || ||| || ||| || |||||| Sbjct 14793349 ACAAACATTTCAACAAACTCAGAACCAGAA-ATGGAGAAGAATGGCACACCAGCTTCACC 14793291 Query 16211 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 16270 ||||| || ||| ||||||||||| || || || || || | || || |||| Sbjct 14793290 AGCAATTGCCTTGGCCAGAAGAGTCTTTCCAGTTCCAGGAGGGCCAACAAGAAGAACACC 14793231 Query 16271 TCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAAT 16330 | || || || ||| | || ||||||| || | ||| || || ||||||| Sbjct 14793230 TTTAGGGATGCGAGCCCCAACTGCAGTAAATCTCTCTGGCTTCTTTAGGAACTCCACAAC 14793171 Query 16331 CTC 16333 ||| Sbjct 14793170 CTC 14793168 >seq26 Length=2022356 Score = 96.9 bits (106), Expect = 4e-15 Identities = 167/242 (69%), Gaps = 3/242 (1%) Strand=Plus/Plus Query 102078 GAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGAT 102137 || ||||| | |||||| | ||| || ||||||| |||||| | |||||||| || Sbjct 1746450 GAAAAGAACCGGCTCTTCCACGCCGTCGAAACAGTGCCATGTGTGGCTAAGAAAGCTGAG 1746509 Query 102138 TGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTT 102197 ||||| |||| ||| | || ||| | || || || || || |||| ||| Sbjct 1746510 TGGGCATTGAAATGGATCGACGGT---TCGGAAACTTTCGCCGAACGGCTAATCGCTTTT 1746566 Query 102198 GCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAG 102257 || || || || || || ||||||||||| |||||||| || | |||| | || ||| Sbjct 1746567 GCTTGCGTGGAAGGGATTTTCTTCTCTGGAAGTTTCTGCGCGATATTTTGGTTAAAAAAG 1746626 Query 102258 CGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTC 102317 || || | ||||| || | ||||| |||||| | ||||| || || || || ||| Sbjct 1746627 CGCGGGTTAATGCCTGGATTAACTTTCTCAAACGAGTTAATCTCACGAGATGAAGGTCTC 1746686 Query 102318 CA 102319 || Sbjct 1746687 CA 1746688 >seq19 Length=3572271 Score = 86.0 bits (94), Expect = 8e-12 Identities = 171/249 (69%), Gaps = 6/249 (2%) Strand=Plus/Plus Query 15917 ATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTATCAAA 15976 |||||| || ||| | ||| || || || ||||| | || || || | | | ||| Sbjct 2132664 ATCAAGAATTTCAGGCCTATTAGTAGCAGCAATGACGATAACTCCAGTGTTGCCAGTAAA 2132723 Query 15977 ACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT-GGCA 16035 ||||||||| || || | | || || | |||||| |||| |||||||| || | Sbjct 2132724 ACCATCCATTTCAGTTAGCAATTGATTTAGAGTTTGCTCCCTCTCATCATTTCCTCCACC 2132783 Query 16036 TACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATG 16095 || ||||| | | | | |||| || |||||||||||||| ||||| || | ||| | Sbjct 2132784 TA-TACCAGTTCCTCTCTCCCTTCCAACAGCATCAATCTCATCTATGAACACCAAGCACG 2132842 Query 16096 GTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCACACCAAC 16153 || |||| | || | ||| ||||||| ||| |||| || ||||| ||||| Sbjct 2132843 GTGGATTAGCCTTTGCCTTGTTAAACAGATCCC--TCACTCTTGAAGCTCCCACTCCAAC 2132900 Query 16154 AAACATCTC 16162 ||||||||| Sbjct 2132901 AAACATCTC 2132909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620695270133280