Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1 161 1e-34 seq2 96.9 4e-15 seq19 82.4 9e-11 >seq1 Length=15579451 Score = 161 bits (178), Expect = 1e-34 Identities = 240/335 (72%), Gaps = 4/335 (1%) Strand=Plus/Minus Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9283 |||||| ||||| | || || || || || || |||| |||||||| | | ||||| Sbjct 14793584 ATCAAGAATATCTGCCCGGTTAGTTGCTGCTATTACAATGATACCTGTGTTACCCTCAAA 14793525 Query 9284 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGC-TGGCA 9342 ||||||||| || |||||||| ||||||| |||||| |||| |||||| ||| | | Sbjct 14793524 ACCATCCATTTCAGTCAAAAGCTGGTTAAGAGTTTGCTCCCTTTCATCGTTCCCACCACC 14793465 Query 9343 TACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATG 9402 || ||||| | | |||| ||| || |||||||| ||||| | ||||||||||| | Sbjct 14793464 TA-TACCAGTTCCTCTTTGCCGTCCAACAGCATCAATTTCATCCACAAAGACAATACAGG 14793406 Query 9403 GTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAA 9462 | ||| || ||| | | || ||||| ||||| | ||| || |||||||||| Sbjct 14793405 GGGCATTCTCCTTGGCCTTCTTGAAAAGATCACGAACTCGAGAGGCACCAACACCAACAA 14793346 Query 9463 ACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCA 9521 |||| || ||||| | | | ||| || | || ||| || ||| || |||||| ||| Sbjct 14793345 ACATTTCAACAAACTCAGAACCAGAA-ATGGAGAAGAATGGCACACCAGCTTCACCAGCA 14793287 Query 9522 ATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 || || ||| ||||||||||| || || || || Sbjct 14793286 ATTGCCTTGGCCAGAAGAGTCTTTCCAGTTCCAGG 14793252 >seq2 Length=14367614 Score = 96.9 bits (106), Expect = 4e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227 || || |||||||| ||||||||||| || || || | || ||| ||||| | ||| Sbjct 5550730 TGAGGCCTTGGTGTTCCAGCATTGAAAAGTGTCGGAGAAGCATGAGTGAACCATCTTTGA 5550789 Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287 |||||| ||| || || | | ||||||||||||| ||| || || || | || Sbjct 5550790 GACATCATGTGATAAGTTTTTATAGCAGAATCAATGTCATCCTTATGAATTCCAACAGCA 5550849 Query 107288 ACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA--T 107345 || | ||| ||||||| ||| || |||| || | | || | || | || |||| | Sbjct 5550850 ACCCTCATTAACATGTGTTGAGGCCTTTCTAT-AACCTTCCCTTGA-ACTTTCAAGAGGT 5550907 Query 107346 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 107394 || | |||| |||||||| | ||||||||| || | ||| ||||||| Sbjct 5550908 AGGACCTCTCGAGGGTTTTAAAGCCAAAGTAATCATAGTCAAAGTCCCG 5550956 >seq19 Length=3572271 Score = 82.4 bits (90), Expect = 9e-11 Identities = 168/247 (68%), Gaps = 2/247 (1%) Strand=Plus/Plus Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9283 |||||| || ||| | ||| || || || ||||| | || || || | | ||| Sbjct 2132664 ATCAAGAATTTCAGGCCTATTAGTAGCAGCAATGACGATAACTCCAGTGTTGCCAGTAAA 2132723 Query 9284 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG-CA 9342 ||||||||| || || | | ||| || | |||||| |||| |||||||| || | Sbjct 2132724 ACCATCCATTTCAGTTAGCAATTGATTTAGAGTTTGCTCCCTCTCATCATTTCCTCCACC 2132783 Query 9343 TACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATG 9402 || ||||| | | | | |||| || |||||||||||||| ||||| || | || | Sbjct 2132784 TAT-ACCAGTTCCTCTCTCCCTTCCAACAGCATCAATCTCATCTATGAACACCAAGCACG 2132842 Query 9403 GTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAA 9462 || |||| | || | | ||| ||||| | || ||| || ||||| ||||||| Sbjct 2132843 GTGGATTAGCCTTTGCCTTGTTAAACAGATCCCTCACTCTTGAAGCTCCCACTCCAACAA 2132902 Query 9463 ACATCTC 9469 ||||||| Sbjct 2132903 ACATCTC 2132909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589936005707760