Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq3 104 3e-17 >seq3 Length=13963513 Score = 104 bits (114), Expect = 3e-17 Identities = 147/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 153768 CAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 153827 || |||||||| | || ||||| ||||| || |||||||||||||| || || || | Sbjct 11523026 CAGAGGTTTGGGGTGCCGATGGGGTATGGTGGCCCTCATGCTGCATTTTTGGCTACTTCC 11523085 Query 153828 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTA--GATAGTGAAG 153885 | |||||||||| ||| || || ||||| | ||| || |||| ||| | || Sbjct 11523086 CAAGAGTATAAGAGGTTGATGCCAGGGCGAATTATCGGT--GTTAGTATTGATTCTTCAG 11523143 Query 153886 GTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAG 153945 | || || | | | ||| | || || || ||||| ||||| | || ||||||| Sbjct 11523144 GGAAGCCTGCTTTGCGTATGGCAATGCAAACCAGGGAGCAACATATTCGCAGGGACAAAG 11523203 Query 153946 CAACCAGTAACATCTGCACAGCTCA 153970 | ||||||||||||||||||||||| Sbjct 11523204 CTACCAGTAACATCTGCACAGCTCA 11523228 Score = 96.9 bits (106), Expect = 4e-15 Identities = 182/261 (70%), Gaps = 5/261 (2%) Strand=Plus/Plus Query 153264 GAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGA 153323 |||||||| ||||||||| || ||||| ||||| |||||||||||||| || | Sbjct 11522525 GAGAATCCAGCTTGGTACACTCAATATACTCCTTATCAGGCTGAGATATCTCAAGGGCGT 11522584 Query 153324 TTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGATTACCAATAGCA 153383 | || |||| | ||||||||||| | || || || ||||| ||||| || || | Sbjct 11522585 CTTGAGTCTTTGCTTAATTACCAAACTATGATTACGGATCTTACTGGATTGCCTATGTCG 11522644 Query 153384 AACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAAT-GCTAT-TAGCATATA 153441 || || || || | ||||| | |||||| || || || ||||| || || | ||| Sbjct 11522645 AATGCTTCACTGCTTGATGAGGGAACTGCTGCTGCCGAGGCAATGGCCATGTGTAATAAT 11522704 Query 153442 ATTCT-ACAAGAGATAAGAAGACTGTCATAGTTGATAAAGATATATTCCCACAGACTCTA 153500 || || | | || | ||||||||| | || ||| ||| || ||| ||||| || Sbjct 11522705 ATACTGAAAGGAAAGAAGAAGACTTTTATCATTGCTAATAATTGTCACCCCCAGACAATA 11522764 Query 153501 G-CAGTTCTAGAGACCAGAGC 153520 | | || || |||||||||| Sbjct 11522765 GATATTTGTA-AGACCAGAGC 11522784 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 155018 TGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGAGGTGG 155077 ||| || ||||| || |||||||| | || ||||||||||| ||||| ||||||||||| Sbjct 11525662 TGGAGCTGATGTTTGCCATCTAAATCTCCACAAAACATTCTGCATTCCTCATGGAGGTGG 11525721 Query 155078 AGGTCCTGGCGTAGGTCCTATAGGTGTAGCAAAACATCTCACACCATTT 155126 || || ||| | || ||||| ||||| || ||| | |||||||| Sbjct 11525722 TGGACCGGGCATGGGACCTATTGGTGTCAAGAAGCATTTGGCACCATTT 11525770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579168823268160