Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq3 87.8 2e-12 >seq3 Length=13963513 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 159664 CAGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACAT 159723 ||||| ||| | |||| ||| || ||| || ||||| || |||||||| | || Sbjct 11525633 CAGGTGGGTTTGACAAACCCAGGTTTTATTGGAGCTGATGTTTGCCATCTAAATCTCCAC 11525692 Query 159724 AAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGTAGCA 159783 || |||||||| ||||| ||||||||||| || || ||| | || ||||||||||| Sbjct 11525693 AAAACATTCTGCATTCCTCATGGAGGTGGTGGACCGGGCATGGGACCTATTGGTGTCAAG 11525752 Query 159784 AAACATCTCACACCATTT 159801 || ||| | |||||||| Sbjct 11525753 AAGCATTTGGCACCATTT 11525770 Score = 86.0 bits (94), Expect = 7e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 157939 GAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGA 157998 |||||||| ||||||||| || ||||| ||||| |||||||||||||| || | Sbjct 11522525 GAGAATCCAGCTTGGTACACTCAATATACTCCTTATCAGGCTGAGATATCTCAAGGGCGT 11522584 Query 157999 TTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGATAGCA 158058 | || |||| | ||||||||||| | || || || || || ||| | || || | Sbjct 11522585 CTTGAGTCTTTGCTTAATTACCAAACTATGATTACGGATCTTACTGGATTGCCTATGTCG 11522644 Query 158059 AACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 158103 || || || || | ||||| | |||||| || || || |||||| Sbjct 11522645 AATGCTTCACTGCTTGATGAGGGAACTGCTGCTGCCGAGGCAATG 11522689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588006552212640