Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq9 125 5e-24 seq5 105 4e-18 seq2 105 4e-18 seq13 93.3 3e-14 seq10 87.8 1e-12 seq1649 84.2 1e-11 >seq9 Length=8984705 Score = 125 bits (138), Expect = 5e-24 Identities = 161/220 (73%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 34766 CCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTC 34825 || ||||||||| || | || || ||||||||||||||||| | |||| ||| | Sbjct 7052839 CCGCAAAACCAAATGGAGGGTTGACTCCTTCTGAATGTTATAGTCTGCAAGGGTTCTGCC 7052780 Query 34826 ATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34885 ||| || ||||||||||||||||| |||| | ||||||||| | || | |||||||| Sbjct 7052779 ATCTTCAAGCTGTTTTCCGGCAAAAATTAACCTCTGCTGGTCTGGTGGGATACCCTCCTT 7052720 Query 34886 GTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGG 34941 ||| ||||||| || || || ||||||| || ||| || || | | Sbjct 7052719 GTCCTGAATCTTCGCCTTCAC--AT--TATCGATGGTATCTGAACTCTCCACCTCTAAAG 7052664 Query 34942 TTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | |||||||| || |||||||| |||||||| |||||||| Sbjct 7052663 TGATGGTTTTCCCAGTGAGAGTTTTCACAAATATCTGCAT 7052624 Score = 104 bits (114), Expect = 2e-17 Identities = 157/218 (72%), Gaps = 9/218 (4%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||||||||| || | || || ||||| ||||||||||| | |||| ||| |||| Sbjct 7045946 CAAAACCAAATGGAGGGTTGACTCCTTCTGGATGTTATAGTCTGCAAGGGTTCTGCCATC 7045887 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 || ||||||||||| ||||| |||| | ||||||||| | || | ||||||||||| Sbjct 7045886 TTCAAGCTGTTTTCCAGCAAAAATTAACCTCTGCTGGTCTGGTGGGATACCCTCCTTGTC 7045827 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGT-T 34943 |||||| || || || | ||||| | ||| ||| || || | || Sbjct 7045826 CTGAATCTTTGCCTTCAC--AT--TGTCGATGGTATCCGAACTCTCCACCTCCAAAGTGG 7045771 Query 34944 ATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||||||| || |||||||| |||||||| |||||||| Sbjct 7045770 ATGGTTTTCCCGGTGAGAGTTTTCACAAATATCTGCAT 7045733 Score = 93.3 bits (102), Expect = 3e-14 Identities = 139/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| || || || || | |||| | || |||| || |||||||| || ||||| Sbjct 7052586 TCCTTCTGGATATTGTAATCAGCAAGGGTGCGGCCATCCTCTAGCTGTTTACCAGCAAAG 7052527 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | || |||||| |||| | |||||||||||| ||||| |||||| || Sbjct 7052526 ATAAGCCTCTGTTGGTCTGGCGGGATCCCCTCCTTGTCTTGGATCTTGGCTTTGAC--AT 7052469 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 |||| || ||| | || || || | ||| ||||| || || || || || || Sbjct 7052468 --TATCAATAGTGTCAGAGCTTTCCACCTCAAGGGTGATGGTCTTGCCAGTAAGGGTTTT 7052411 Query 34967 CACAAAGATCTGCAT 34981 ||||||||||||||| Sbjct 7052410 CACAAAGATCTGCAT 7052396 Score = 89.7 bits (98), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 34748 ATCAT--TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTA 34805 ||||| |||||||||| | ||||||||||||||||| || || || || |||||| Sbjct 1708104 ATCATAGTTCCTCCCCTAAGCCTCAAAACCAAGTGAAGAGTCGACTCCTTTTGGATGTTA 1708163 Query 34806 TAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGG 34865 || || | ||| |||| |||| || ||||| || || ||||| |||| || ||||| Sbjct 1708164 TAATCTGCAAGAGTTCGACCATCTTCAAGCTGCTTACCAGCAAAAATTAATCTCTGCTGA 1708223 Query 34866 TCTTGCGGCACCCCCTCCTTGTC 34888 || | || | || |||||||| Sbjct 1708224 TCAAGAGGGATTCCTTCCTTGTC 1708246 Score = 84.2 bits (92), Expect = 1e-11 Identities = 105/143 (73%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 34748 ATCAT--TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTA 34805 ||||| |||||||||| | ||||||||||||||||| || || || ||||||||| Sbjct 1646373 ATCATAGTTCCTCCCCTAAGCCTCAAAACCAAGTGAAGAGTCGACTCCTTTTGAATGTTA 1646432 Query 34806 TAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGG 34865 || || | ||| |||| | || || |||||||| || ||||| || | || ||||| Sbjct 1646433 TAATCTGCAAGAGTTCGACCTTCTTCAAGCTGTTTGCCCGCAAAAATCAATCTCTGCTGA 1646492 Query 34866 TCTTGCGGCACCCCCTCCTTGTC 34888 || | || | || ||||| || Sbjct 1646493 TCAGGAGGGATTCCTTCCTTATC 1646515 >seq5 Length=11097736 Score = 105 bits (116), Expect = 4e-18 Identities = 155/217 (71%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||| | ||||| |||| ||| ||||| ||||| ||||| | | | | || | || || Sbjct 4357015 AACGAGGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCGGCTAAGGTGCGGCCGTCTTC 4356956 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| || ||||| || || || ||||||||||| |||| | || |||||||| Sbjct 4356955 GAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCCGGCGGGATTCCTTCCTTGTCTTG 4356896 Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGG 34947 ||||| |||||| || | ||||| ||| || || || |||| |||||||| Sbjct 4356895 GATCTTGGCTTTGAC--AT--TGTCGATGGTGTCAGAGGATTCGACCTCGAGGGTTATGG 4356840 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 | || ||||| || || || || ||||||||||| || Sbjct 4356839 TCTTCCCCGTTAGGGTTTTGACGAAGATCTGCATCTT 4356803 >seq2 Length=14367614 Score = 105 bits (116), Expect = 4e-18 Identities = 153/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 ||||| || | ||| || ||||| ||||||||||| | ||| |||| |||| || Sbjct 9074257 ACCAAATGGAGGGTGGACTCCTTCTGGATGTTATAGTCAGCTAGGGTTCGGCCATCTTCA 9074198 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| || ||||| || || | ||| ||||| | || | || |||||||| Sbjct 9074197 AGCTGTTTGCCAGCAAAAATAAGCCTTTGTTGGTCAGGAGGGATTCCTTCCTTGTCTTGG 9074138 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGT 34948 ||||| ||||| || |||| || ||| | |||||| || | ||| || || Sbjct 9074137 ATCTTAGCCTTGAC--AT--TATCAATAGTGTCAGAGCTCTCAACCTCCAAGGTGATAGT 9074082 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||| ||||||||||| |||||||| |||||| Sbjct 9074081 CTTTCCTGTGAGAGTCTTGACAAAGATTTGCATA 9074048 Score = 102 bits (112), Expect = 5e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| || ||||| ||||||||||| | ||| |||| |||| || Sbjct 9074029 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCAGCTAGGGTTCGGCCATCTTCA 9073970 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| || ||||| || || | ||||||||| | || | || |||||||| Sbjct 9073969 AGCTGTTTGCCAGCAAAAATAAGCCTTTGCTGGTCGGGAGGGATTCCTTCCTTGTCTTGG 9073910 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| ||||| | || | ||| | |||||| || | ||| ||||| || Sbjct 9073909 ATCTTAGCCTTGACATTGTCAATAGTGTCAGAGCTCTCAACCTCAAGGGTGATGGTCTTG 9073850 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || || ||||||||||| ||||| Sbjct 9073849 CCTGTAAGGGTTTTCACAAAGATTTGCAT 9073821 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||||| || || || ||||||||||| || | ||| | | | |||| || Sbjct 9074714 AACCAAGTGAAGGGTTGACTCCTTTTGAATGTTATAATCAGCAAGTGTCCTTCCATCTTC 9074655 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || |||||||| ||||| || | | ||||||||| | || | ||||| || || Sbjct 9074654 AAGTTGTTTTCCAGCAAAAATCAACCTCTGCTGGTCTGGTGGGATACCCTCTTTATCCTG 9074595 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 |||||| ||||| | || | || | ||| || || | || || ||||| Sbjct 9074594 AATCTTGGCCTTGACATTGTCAATAGTGTCTGAGCTCTCTACCTCCAAAGTGATCGTTTT 9074535 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||||||||| |||||||| ||||| Sbjct 9074534 ACCTGTGAGAGTCTTGACAAAGATTTGCAT 9074505 Score = 84.2 bits (92), Expect = 1e-11 Identities = 134/190 (71%), Gaps = 8/190 (4%) Strand=Plus/Minus Query 34797 TGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGT 34856 || ||||||||||| | ||| | || | || || |||||||| || ||||| || || Sbjct 9074461 TGGATGTTATAGTCAGCTAGGGTGCGACCGTCTTCAAGCTGTTTGCCAGCAAAGATAAGC 9074402 Query 34857 CGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATC 34916 | ||| || || | || | || |||||||| ||||| |||||| || |||| Sbjct 9074401 CTTTGTTGATCAGGAGGGATTCCTTCCTTGTCTTGGATCTTAGCTTTGAC--AT--TATC 9074346 Query 34917 GAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAA 34972 || ||| | |||||| || | ||| || || ||||| ||||| ||||| ||||| Sbjct 9074345 AATTGTATCAGAGCTCTCAACCTCCAAGGTGATAGTCTTTCCTGTGAGTGTCTTGACAAA 9074286 Query 34973 GATCTGCATA 34982 ||| |||||| Sbjct 9074285 GATTTGCATA 9074276 >seq13 Length=7441454 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||||||||| | ||| | || | || || Sbjct 4972686 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGCTAGGGTCCGGCCGTCTTCA 4972627 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || ||||| ||||| || ||||| ||||| | || | || |||||||| Sbjct 4972626 AGCTGCTTGCCGGCGAATATGAGACGTTGTTGGTCCGGTGGGATGCCTTCCTTGTCTTGG 4972567 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | || | || || || || || | ||||||||| || Sbjct 4972566 ATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGGATTCGACCTCCAAGGTTATGGTCTTA 4972507 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| || || ||||| ||||||||||| Sbjct 4972506 CCCGTTAGGGTTTTCACGAAGATCTGCAT 4972478 >seq10 Length=8461613 Score = 87.8 bits (96), Expect = 1e-12 Identities = 140/197 (71%), Gaps = 12/197 (6%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTC--CGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAA 34848 ||||||||||||||||| || | |||| | || |||| |||| ||||| ||||||| Sbjct 2238603 TCTTTCTGAATGTTATAATCAGCTAAAGTCCTC--CCATCCTCCAATTGTTTCCCGGCAA 2238660 Query 34849 ATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGG 34908 | || || | |||||| ||| | || | || ||||| || |||||| ||||| Sbjct 2238661 AGATAAGCCTTTGCTGATCTGGGGGGATTCCTTCCTTATCCTGAATCTTTGCCTTGAC-- 2238718 Query 34909 ATGCTATCGAT--TCACCGGCC--TCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTC 34964 | ||||||| | ||| | || || || | ||| || |||||||| || | ||| Sbjct 2238719 --GTTATCGATTGTATCCGAACTTTCCACCTCCAAGGTGATTGTTTTTCCAGTCAAGGTC 2238776 Query 34965 TTCACAAAGATCTGCAT 34981 || ||||| |||||||| Sbjct 2238777 TTGACAAAAATCTGCAT 2238793 >seq1649 Length=3542 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| || || ||||| | || | || |||| |||| ||| || || ||||| Sbjct 1002 TCCTTCTGGATATTGTAGTCAGCCAGAGTGCGACCATCCTCCAACTGCTTGCCAGCAAAG 943 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | | ||||||||| | || | |||||||||||| |||||| ||| || Sbjct 942 ATCAACCTCTGCTGGTCTGGAGGAATCCCCTCCTTGTCCTGAATCTTTGCTTTCACATTG 883 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || | |||||| || | ||| |||||||| || || | ||||| ||| Sbjct 882 TCAATCGTGTCTGAGCTCTCAACCTCCAGGGTGATGGTTTTCCCAGTCAAGGTCTTGACA 823 Query 34971 AAGATCTGCAT 34981 || |||||||| Sbjct 822 AATATCTGCAT 812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324609568389072