Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq26 127 2e-24 >seq26 Length=2022356 Score = 127 bits (140), Expect = 2e-24 Identities = 297/444 (67%), Gaps = 17/444 (4%) Strand=Plus/Minus Query 37173 AAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTT 37232 || || || ||||| ||||| | ||||||||||| || || || || || || ||| Sbjct 1746706 AAGCAAGCGAAATCGCAATGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGAAAGTT 1746647 Query 37233 AATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCA-AAAGATCCAGAAAA 37291 ||||| |||||||| || | ||||| | ||||||||| || ||| ||| |||||| || Sbjct 1746646 AATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCGC-GCAGAAACTTCCAGAGAA 1746588 Query 37292 GAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTT---GAACTATA 37348 |||||| ||||| || ||||| || | || ||| |||||||| |||| Sbjct 1746587 GAAAATCCCTTCCACGCAAGCAAAAGCGATTAGCCGTTCGGCGAAAGTTTCCGAAC---- 1746532 Query 37349 ATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTA---ACACATTCAATTGTTTC 37405 | |||||||| || ||| || || || ||| |||||| | |||||| Sbjct 1746531 --CGTCGATCCATTTCAATGCCCACTCAGCTTT---CTTAGCCACACATGGCACTGTTTC 1746477 Query 37406 AATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAA 37465 | || | ||||| ||| ||||| | || | || ||||| |||| || | Sbjct 1746476 GACGGCGTGGAAGAGCCGGTTCTTTTCGTTGGAGTCCTTGATGTAAGTTTCAAGGAGGAG 1746417 Query 37466 ACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGC 37525 ||||||||| || ||||| |||||||| || || || || || ||||| || | ||| Sbjct 1746416 ACTATACATCTCGGAGTGGATATTTTCGATGGCGATTTGGAAGCCATAGAACGCACGAGC 1746357 Query 37526 TTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATC 37585 || || | ||| || || || | |||| || | ||||| || || ||||| Sbjct 1746356 CTCGGAGATTTGGACTTCCTTCATGAACCGGACGGCGAGATTTTCGAGGACGATACCATC 1746297 Query 37586 ACTAGCTGCAAAGAAAGCAAGAAC 37609 ||||||||||| || || || Sbjct 1746296 GGAGGCTGCAAAGAAGGCGAGGAC 1746273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592271828346960