Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq1649 113 3e-20 seq14 111 1e-19 seq9 105 5e-18 seq4 100 2e-16 seq10 89.7 4e-13 seq2 87.8 1e-12 >seq1649 Length=3542 Score = 113 bits (124), Expect = 3e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| || ||| ||| || || |||||||| |||| ||| | ||| | || |||||||| Sbjct 1015 ATGCAGGGTGGACTCCTTCTGGATATTGTAGTCAGCCAGAGTGCGACCATCCTCCAACTG 956 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 ||| || ||||| |||| | ||| || || | |||| ||||||||||| |||||| Sbjct 955 CTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATCCCCTCCTTGTCCTGAATCTT 896 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 | ||| ||| | | | ||||| ||| ||||||| || || ||||| || || Sbjct 895 TGCTTTCACATTGTCAATCGTGTCTGAGCTCTCAACCTCCAGGGTGATGGTTTTCCCAGT 836 Query 48743 CAAAGTTTTTACAAAAATCTGCATC 48767 ||| || || ||||| ||||||||| Sbjct 835 CAAGGTCTTGACAAATATCTGCATC 811 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| |||||| || || || ||||||||| ||||||||||| | || | | Sbjct 573 AGACGCAGCACCAAGTGGAGGGTTGACTCTTTTTGGATATTGTAATCTGCAAGTGTCCTC 514 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||||||| || || ||||||||||| | ||||||||| | || | || ||| Sbjct 513 CCATCCTCCAACTGTTTGCCAGCAAATATCAGCCTCTGTTGATCTGGAGGGATACCTTCC 454 Query 48669 TTGTCGCTAATCTTTTGTTTTACA 48692 ||||| ||||| ||||||| Sbjct 453 TTGTCCTGGATCTTAGCTTTTACA 430 >seq14 Length=6982396 Score = 111 bits (122), Expect = 1e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| |||| || || ||| ||| || |||||||||||||||| | | | | Sbjct 1119799 AGGCGCAAGACCAGGTGAAGGGTGGACTCCTTCTGAATATTGTAATCAGCCAAAGTCCTT 1119858 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||| ||||| || ||||| |||| | || ||||| | |||| || ||| Sbjct 1119859 CCATCTTCCAATTGCTTCCCAGCAAAAATCAACCTTTGCTGATCTGGTGGAATCCCTTCC 1119918 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||||| || ||| | | | | || || ||||||||||| ||| Sbjct 1119919 TTGTCCTGAATCTTTGCCTTAACATTATCAATCGTATCCGAGCTCTCCACCTCCAAAGTA 1119978 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || ||||| || |||| ||| || || |||||||||||| Sbjct 1119979 ATGGTTTTCCCTGTCAGAGTCTTGACGAAAATCTGCATC 1120017 >seq9 Length=8984705 Score = 105 bits (116), Expect = 5e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||| ||| || ||| ||| || || |||||||| |||| ||| | ||| | || ||| Sbjct 7046621 ACCAGATGCAGGGTGGACTCCTTCTGGATATTGTAGTCAGCCAGAGTGCGACCATCCTCC 7046562 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || ||||| || ||||| |||| | ||| || || | |||| ||||||||||| | Sbjct 7046561 AA-TGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATCCCCTCCTTGTCCTGA 7046503 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 |||||| ||| ||| | | | ||||| || || ||||||| || || ||||| Sbjct 7046502 ATCTTTGCTTTCACATTGTCAATCGTGTCTGA-GCTTCAACCTCCAGGGTGATGGTTTTC 7046444 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || ||||| || || | ||| ||||||||| Sbjct 7046443 CCAGTCAAGGTCTTGAAAAATATCTGCATC 7046414 Score = 105 bits (116), Expect = 5e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| || ||| ||| || || |||||||| |||| ||| | ||| | || |||||||| Sbjct 7053507 ATGCAGGGTGGACTCCTTCTGGATATTGTAGTCAGCCAGAGTGCGACCATCCTCCAACTG 7053448 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 ||| || ||||| |||| | ||| || || | |||| ||||||||||| |||||| Sbjct 7053447 CTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAA-TCCCTCCTTGTCCTGAATCTT 7053389 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 | ||| ||| | | | ||||| ||| ||||||| || || | ||||||| | Sbjct 7053388 TGCTTTCACATTGTCAATCGTGTCTGAGCTCTCAACCTCCAGGGTGAT-GGTTTTCCCAT 7053330 Query 48743 CAAAGTTTTTACAAAAATCTGCATC 48767 ||| || || ||||| ||||||||| Sbjct 7053329 CAAGGTCTTGACAAATATCTGCATC 7053305 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| |||||| || || || ||||||||| ||||||||||| | || | | Sbjct 7053069 AGACGCAGCACCAAGTGGAGGGTTGACTCTTTTTGGATATTGTAATCTGCAAGTGTCCTC 7053010 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||||||| || || ||||||||||| | ||||||||| | || | || ||| Sbjct 7053009 CCATCCTCCAACTGTTTGCCAGCAAATATCAGCCTCTGTTGATCTGGAGGGATACCTTCC 7052950 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| ||||||| | | | || || ||| || |||| ||| Sbjct 7052949 TTGTCCTGGATCTTAGCTTTTACATTGTCAATGGTATCAGAACTCTCAACTTCCAAGGTA 7052890 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| || | || || |||||||| ||||| Sbjct 7052889 ATAGTCTTTCCAGTGAGGGTCTTGACAAAAATTTGCAT 7052852 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 |||||||| |||||||| || || ||| || ||||| || || || | || ||| Sbjct 7052841 AGCCGCAAAACCAAATGGAGGGTTGACTCCTTCTGAATGTTATAGTCTGCAAGGGTTCTG 7052782 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | ||| || |||||||| || | | ||| || || | || | |||||| Sbjct 7052781 CCATCTTCAAGCTGTTTTCCGGCAAAAATTAACCTCTGCTGGTCTGGTGGGATACCCTCC 7052722 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || ||| | | | | ||||| ||||||||| | || Sbjct 7052721 TTGTCCTGAATCTTCGCCTTCACATTATCGATGGTATCTGAACTCTCCACCTCTAAAGTG 7052662 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || | |||||| ||||| |||||||| Sbjct 7052661 ATGGTTTTCCCAGTGAGAGTTTTCACAAATATCTGCAT 7052624 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 48559 CCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCA 48618 ||||||| || || ||||||||| ||||||||||| | || | | | || |||| Sbjct 7046169 CCAAATGGAGGGTTGACTCTTTTTGGATATTGTAATCTGCAAGTGTCCTCCCATCCTCCA 7046110 Query 48619 ACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAA 48678 |||| || |||||||||||||| | ||||||||| | || | || |||||||| | Sbjct 7046109 ACTGTTTGCCGGCAAATATCAGCCTCTGTTGATCTGGAGGGATACCTTCCTTGTCCTGGA 7046050 Query 48679 TCTTTTGTTTTACA 48692 |||| ||||||| Sbjct 7046049 TCTTAGCTTTTACA 7046036 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || || | || | || || ||| ||| || || ||||||||||||| Sbjct 7052623 GCCACCCCTAAGACGAAGGACAAGGTGGAGGGTGGACTCCTTCTGGATATTGTAATCAGC 7052564 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || | || || | ||| ||||| ||||| || || | |||||| || | || Sbjct 7052563 AAGGGTGCGGCCATCCTCTAGCTGTTTACCAGCAAAGATAAGCCTCTGTTGGTCTGGCGG 7052504 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | ||||||||||| ||||| ||| ||| | | | || || || ||||| Sbjct 7052503 GATCCCCTCCTTGTCTTGGATCTTGGCTTTGACATTATCAATAGTGTCAGAGCTTTCCAC 7052444 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||| | || || || || || || | ||||| ||||| ||||||||| Sbjct 7052443 CTCAAGGGTGATGGTCTTGCCAGTAAGGGTTTTCACAAAGATCTGCATC 7052395 >seq4 Length=12062019 Score = 100 bits (110), Expect = 2e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || || |||||||| | ||| | || |||| ||||||||||| || || || Sbjct 4155096 CTCCTTCTGGATGTTGTAATCTGCAAGAGTGCGCCCGTCCTCCAACTGCTTCCCAGCGAA 4155037 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || | ||| ||||| | |||| |||||||| || ||| ||| ||| ||| Sbjct 4155036 GATGAGCCTCTGCTGATCAGGTGGAATCCCCTCCTTATCTTGAATTTTTGCTTTCACATT 4154977 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | | || || ||||||||| | ||||||||| ||||| |||| || || || Sbjct 4154976 ATCGATTGTATCAGAACTCTCCACCTCAAGCGTAATCGTCTTTCCGGTCAGCGTCTTCAC 4154917 Query 48755 AAAAATCTGCATC 48767 || ||||||||| Sbjct 4154916 GAAGATCTGCATC 4154904 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 |||| || ||| | || || ||| ||| || || ||||||||||| | || | | Sbjct 4154894 AGCCTCAGCACAAGGTGAAGAGTGGACTCCTTCTGGATATTGTAATCCGCAAGGGTCCTG 4154835 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| ||||||||||| ||||| ||||||| | ||| ||||||| || | || ||| Sbjct 4154834 CCGTCCTCCAACTGCTTCCCGGCGAATATCAACCTCTGCTGATCCGGAGGGATCCCTTCC 4154775 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || || ||| || || | | | | || || ||| ||||||| ||| Sbjct 4154774 TTATCCTGGATTTTTGCCTTGACGTTATCAATTGTATCCGAACTCTCTACCTCCAGAGTA 4154715 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || ||||| ||||| || ||||||||||| Sbjct 4154714 ATAGTTTTCCCGGTCAAGGTTTTGACGAAAATCTGCAT 4154677 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || ||||| ||||||||||| | || |||| |||| || | ||||| ||||| || Sbjct 4154411 TCCTTTTGGATATTGTAATCCGCAAGGGTTCGGCCGTCTTCAAGTTGCTTGCCGGCGAAG 4154352 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| ||||||||||| | |||| ||| |||||||| ||||| || || Sbjct 4154351 ATCAAGCGCTGTTGATCAGGAGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTG 4154292 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | ||||| ||||||||| | || || ||||| || || || ||||| || Sbjct 4154291 TCGATGGTGTCTGAGCTCTCCACCTCGAGGGTGATGGTTTTGCCGGTTAAGGTTTTCACG 4154232 Query 48756 AAAATCTGCATCGTGT 48771 || ||||||||| ||| Sbjct 4154231 AAGATCTGCATCTTGT 4154216 >seq10 Length=8461613 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 |||||| ||||| || ||||||| || | | | | || ||||| || || |||||||| Sbjct 2238602 CTCTTTCTGAATGTTATAATCAGCTAAAGTCCTCCCATCCTCCAATTGTTTCCCGGCAAA 2238661 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || | || ||||| | ||| | || ||||| || ||||||| || || Sbjct 2238662 GATAAGCCTTTGCTGATCTGGGGGGATTCCTTCCTTATCCTGAATCTTTGCCTTGACGTT 2238721 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | | || || |||||||||| || || |||||||| ||||| || || || Sbjct 2238722 ATCGATTGTATCCGAACTTTCCACCTCCAAGGTGATTGTTTTTCCAGTCAAGGTCTTGAC 2238781 Query 48755 AAAAATCTGCAT 48766 |||||||||||| Sbjct 2238782 AAAAATCTGCAT 2238793 >seq2 Length=14367614 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611 ||||||||||| || || || || ||||| ||||| || |||| ||| ||| | Sbjct 9074947 CGCAACACCAAGTGAAGGGTAGATTCCTTTTGGATATTATAGTCAGCGAGAGTTCTCCCA 9074888 Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || || | |||||| || ||||| || || | || || || | || | |||||||| Sbjct 9074887 TCTTCAAGCTGCTTGCCAGCAAAGATAAGCCTTTGCTGGTCTGGTGGGATACCCTCCTTA 9074828 Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731 || |||||| || ||| | | | | ||||| ||| ||||||| || || Sbjct 9074827 TCTTGGATCTTTGCCTTCACATTATCAATGGTATCTGAACTCTCAACCTCCAATGTGATA 9074768 Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || |||||||| | ||| || |||||||| |||||| Sbjct 9074767 GTCTTTCCCGTAAGAGTCTTCACAAAAATTTGCATC 9074732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380909400379902