Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq26 96.9 6e-15 >seq26 Length=2022356 Score = 96.9 bits (106), Expect = 6e-15 Identities = 364/568 (64%), Gaps = 15/568 (3%) Strand=Plus/Minus Query 48122 TAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAG 48181 || |||| ||| || || || | || | ||||| || || ||| | | |||| ||| Sbjct 1746712 TACAGCAAGCAAGCGAAATCGCAATGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAG 1746653 Query 48182 AAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCA 48241 || | |||||||| | ||| | || ||| | ||| || || || |||| ||| Sbjct 1746652 AAAGTTAATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCGCGCAGAAACTTCCA 1746593 Query 48242 GAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC 48301 |||||||| || || ||||| || || ||| | |||| || |||||| | Sbjct 1746592 GAGAAGAAAATCCCTTCCACGCAAGCAAAAGCGATTAGCCGTTCGGCGAAAGTTTCCGAA 1746533 Query 48302 TTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCT 48361 ||| |||||| | ||||| || || ||||| | ||||||| || || Sbjct 1746532 CCGTC---GATCCATTTCAATGCCCACTCAGCTTTCTTAGCCACACATGGCACTGTTTCG 1746476 Query 48362 ATGGCCCGGAAGAGC---TTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGC 48415 | ||| |||||||| ||||| || | |||| | || || | ||| Sbjct 1746475 ACGGCGTGGAAGAGCCGGTTCTTT---TCGTTGGAGTCCTTGATGTAAGTTTCAAGGAGG 1746419 Query 48416 AGCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCC 48475 || | |||||||| ||||| | ||| || || ||||| ||||| || ||||| || Sbjct 1746418 AGACTA---TACATCTCGGAGTGGATATTTTCGATGGCGATTTGGAAGCCATAGAACGCA 1746362 Query 48476 CTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATC 48535 | ||||| | | || ||||| | ||| | | ||||| || ||| || Sbjct 1746361 CGAGCCTCGGAGATTTGGACTTCCTTCATGAACCGGACGGCGAGATTTTCGAGGACGATA 1746302 Query 48536 CCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTG 48595 ||||| || || ||||||||||| ||||| || | | ||| ||||| ||| || ||| Sbjct 1746301 CCATCGGAGGCTGCAAAGAAGGCGAGGACGTGAGTGATGAAGTGGCGTTCGCCGTCGGTA 1746242 Query 48596 AGAGCATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGAC 48655 |||| | |||| ||| || || || |||||||| | ||||| ||||| Sbjct 1746241 AGAGTTTCCCAGTGGCGTAGATCCGACGAGAGATCGACTTCTTCGGCGGTCCAAAAGGAG 1746182 Query 48656 GCGAGTGCTTTTTTGTACATGCCCCATA 48683 || ||||| |||||||| |||||| Sbjct 1746181 GCTTCGGCTTTCTTGTACATTTCCCATA 1746154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931462073372160