Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq14 100 2e-16 seq10 100 2e-16 seq2 86.0 5e-12 seq9 84.2 2e-11 >seq14 Length=6982396 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || || | |||||||||||||| ||| ||| ||| ||| Sbjct 1120244 ATGCAAATCTTTGTCAAGACCCTGACGGGTAAAACCATAACCTTGGAAGTTGAAAGTTCC 1120185 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | | | ||| || ||| ||||| || ||| | || |||||| Sbjct 1120184 GACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAAGGAATTCCGCCAGATCAG 1120125 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || || ||||||||||| || || || | || || | |||| |||| ||||||||| Sbjct 1120124 CAAAGGCTTATCTTTGCAGGGAAGCAGCTCGAGGACGGTCGAACTTTGGCTGATTATAAC 1120065 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| ||||| || || || || |||| || || | || || ||||| Sbjct 1120064 ATTCAGAAAGAGTCGACCCTTCATTTGGTTTTGAGGCTTCGTGGTGGGAT 1120015 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || || | ||||| |||||||| ||| ||| ||| || Sbjct 1120472 ATGCAAATCTTTGTCAAGACCCTGACGGGCAAAACCATAACCTTGGAAGTTGAAAGCTCC 1120413 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | | | ||| || ||| |||||||| ||| | ||| || || Sbjct 1120412 GACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAAGAAGGAATTCCCCCGGACCAG 1120353 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || || ||||||||||| || || ||| | || || |||| |||| ||||| ||| Sbjct 1120352 CAAAGGCTTATCTTTGCTGGGAAGCAACTCGAGGACGGCCGAACTTTGGCGGATTACAAC 1120293 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || ||||| || || || || ||| |||| ||| | | || || ||||| Sbjct 1120292 ATCCAAAAGGAGTCAACCCTCCACCTGGTCTTACGTCTCCGTGGTGGGAT 1120243 >seq10 Length=8461613 Score = 100 bits (110), Expect = 2e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || ||||| || || || || || ||||| || ||| || |||| ||| Sbjct 2238794 AATGCAGATTTTTGTCAAGACCTTGACTGGAAAAACAATCACCTTGGAGGTGGAAAGTTC 2238735 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | ||||| ||| || || || || ||| | ||| |||||| Sbjct 2238734 GGATACAATCGATAACGTCAAGGCAAAGATTCAGGATAAGGAAGGAATCCCCCCAGATCA 2238675 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 || || ||||||||||| || ||||||||||| ||| | ||| | || |||||||| Sbjct 2238674 GCAAAGGCTTATCTTTGCCGGGAAACAATTGGAGGATGGGAGGACTTTAGCTGATTATAA 2238615 Query 28733 CATTCAAAAAGAATCTACTCTGCAC 28757 |||||| ||||| ||||| || ||| Sbjct 2238614 CATTCAGAAAGAGTCTACCCTTCAC 2238590 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || ||||| || || || |||||||| ||| |||| || ||| Sbjct 2239249 ATGCAAATCTTCGTCAAAACTTTGACCGGCAAAACCATCACCCTCGAAGTCGAGAGTTCC 2239190 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || ||| | | | | ||||| |||||| ||||| || || | || || ||| Sbjct 2239189 GACACGATTGACAACGTCAAGGCCAAAATCCAGGACAAGGAAGGCATCCCTCCCGACCAA 2239130 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| | || ||||| || || ||||| |||| || ||| |||| ||||||||| Sbjct 2239129 CAGCGGCTCATCTTCGCCGGGAAACAGCTGGAGGACGGCCGTACTTTGGCTGATTATAAC 2239070 Query 28734 ATTCAAAAAGAATCTACTCTGCAC 28757 || ||||| || || ||||| ||| Sbjct 2239069 ATCCAAAAGGAGTCAACTCTCCAC 2239046 >seq2 Length=14367614 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || || | ||||| || || || || || || |||| Sbjct 9074733 ATGCAAATTTTTGTGAAGACTCTTACGGGAAAGACTATCACATTGGAGGTTGAGAGTTCA 9074792 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| ||| ||| || || ||||| | || ||| || Sbjct 9074793 GATACCATTGATAATGTGAAGGCAAAGATCCAAGATAAGGAGGGTATCCCACCAGACCAG 9074852 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || || ||||||||||| ||||| || | |||||| | |||| | || || ||||| Sbjct 9074853 CAAAGGCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGGAGAACTCTCGCTGACTATAAT 9074912 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || ||||| |||||||| || ||| |||| || | ||||| || ||||| Sbjct 9074913 ATCCAAAAGGAATCTACCCTTCACTTGGTGTTGCGTTTACGTGGTGGGAT 9074962 >seq9 Length=8984705 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 28668 GATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 28727 ||||| |||||| | || |||||||||||||| | ||||| | |||| | || ||| Sbjct 1646494 GATCAGCAGAGATTGATTTTTGCGGGCAAACAGCTTGAAGAAGGTCGAACTCTTGCAGAT 1646435 Query 28728 TATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAG 28768 |||||||||||||| || || ||||| ||| |||| || || Sbjct 1646434 TATAACATTCAAAAGGAGTCGACTCTTCACTTGGTTTTGAG 1646394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425373308612046