Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq3 107 2e-18 >seq3 Length=13963513 Score = 107 bits (118), Expect = 2e-18 Identities = 149/207 (72%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 139315 CTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTT 139374 |||| |||||||||||||||||||| |||||||| || | |||||| ||||| || |||| Sbjct 11523230 CTTGAGCTGTGCAGATGTTACTGGTAGCTTTGTCCCTGCGAATATGTTGCTCCCTGGTTT 11523171 Query 139375 GTAGTGCTAATCTGTATGCAGGATTGCCTTCGCTGTC--CACTGACTGACCTACAATTCT 139432 | | ||| | | | ||||| || ||| || ||| || ||| | ||||| Sbjct 11523170 GCATTGCCATACGCAAAGCAGGCTTCCCTGAAGAATCAATACTAAC--ACCGATAATTCG 11523113 Query 139433 GCCAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCC 139492 || || ||| |||||||||| | | || || || |||||||||||||| || || Sbjct 11523112 CCCTGGCATCAACCTCTTATACTCTTGGGAAGTAGCCAAAAATGCAGCATGAGGGCCACC 11523053 Query 139493 GTATCCCATAGGAATACCAAACCTTTG 139519 || ||||| || | |||||||| || Sbjct 11523052 ATACCCCATCGGCACCCCAAACCTCTG 11523026 Score = 100 bits (110), Expect = 3e-16 Identities = 121/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918 ||||||||| || || |||||| | ||||| | || || || || | || || ||||| Sbjct 11522689 CATTGCCTCGGCAGCAGCAGTTCCCTCATCAAGCAGTGAAGCATTCGACATAGGCAATCC 11522630 Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978 ||||| || || || | ||||||||||| | |||| || | | || |||||||| Sbjct 11522629 AGTAAGATCCGTAATCATAGTTTGGTAATTAAGCAAAGACTCAAGACGCCCTTGAGATAT 11522570 Query 139979 CTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTC 140023 |||||| ||||| ||||| || ||||||||| |||||||| Sbjct 11522569 CTCAGCCTGATAAGGAGTATATTGAGTGTACCAAGCTGGATTCTC 11522525 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 138161 AAATGGTGTGAGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATG 138220 |||||||| | ||| || ||||||||||| || | ||| || || ||||||||||| Sbjct 11525770 AAATGGTGCCAAATGCTTCTTGACACCAATAGGTCCCATGCCCGGTCCACCACCTCCATG 11525711 Query 138221 TGGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCATAGTCACATGG 138280 ||||| |||||||| || || | ||||||||| || ||||| || ||| || ||| Sbjct 11525710 AGGAATGCAGAATGTTTTGTGGAGATTTAGATGGCAAACATCAGCTCCAATAAAACCTGG 11525651 Query 138281 TTTTGCTAGACCTACCTG 138298 |||| | ||| ||||| Sbjct 11525650 GTTTGTCAAACCCACCTG 11525633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578954439546480