Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1 114 2e-20 seq2 96.9 4e-15 seq7 87.8 2e-12 seq19 84.2 3e-11 >seq1 Length=15579451 Score = 114 bits (126), Expect = 2e-20 Identities = 280/420 (67%), Gaps = 6/420 (1%) Strand=Plus/Plus Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCC 175290 ||| ||||||| || || ||| | || ||||||| | || | ||| || ||||| Sbjct 14793168 GAGGTTGTGGAGTTCCTAAAGAAGCCAGAGAGATTTACTGCAGTTGGGGCTCGCATCCCT 14793227 Query 175291 CGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATC 175350 ||| | ||||| | || || || || |||||||| || || ||| || || Sbjct 14793228 AAAGGTGTTCTTCTTGTTGGCCCTCCTGGAACTGGAAAGACTCTTCTGGCCAAGGCAATT 14793287 Query 175351 GCGGGTGAATCAAATGTCCCATTCATC--CAGTGCTCTGCCGCAAACTTTGTGGAGATGT 175408 || |||||| | ||| |||||| || || | |||| | | ||||| || |||| Sbjct 14793288 GCTGGTGAAGCTGGTGTGCCATTCTTCTCCATT--TCTGGTTCTGAGTTTGTTGAAATGT 14793345 Query 175409 TTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAAC 175468 |||||||||| |||||| | ||||| ||||| || | | ||| || ||| | Sbjct 14793346 TTGTTGGTGTTGGTGCCTCTCGAGTTCGTGATCTTTTCAAGAAGGCCAAGGAGAATGCCC 14793405 Query 175469 CATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTA 175528 | ||||||||||| | ||||| |||||||| || || |||| | | ||||| || Sbjct 14793406 CCTGTATTGTCTTTGTGGATGAAATTGATGCTGTTGGACGGCAAAGAGGAACTGGT-ATA 14793464 Query 175529 TG-CCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGC 175587 | | || || || || || ||||| |||| || || | || || |||||||| Sbjct 14793465 GGTGGTGGGAACGATGAAAGGGAGCAAACTCTTAACCAGCTTTTGACTGAAATGGATGGT 14793524 Query 175588 TTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGAT 175647 ||||| | | || || || | || || || || ||||| || | ||||| |||||| Sbjct 14793525 TTTGAGGGTAACACAGGTATCATTGTAATAGCAGCAACTAACCGGGCAGATATTCTTGAT 14793584 >seq2 Length=14367614 Score = 96.9 bits (106), Expect = 4e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAAC 75185 ||||||| ||| | || ||||||||| | |||||||| |||| | ||| |||| || Sbjct 5550956 CGGGACTTTGACTATGATTACTTTGGCTTTAAAACCCTCGAGAGGTCCTACCTCTTGAAA 5550897 Query 75186 GGCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCA 75245 | || | || | | || |||| || || ||||||| ||| |||| || | || | Sbjct 5550896 GT-TCAAGGGAAGGTT-ATAGAAAGGCCTCAACACATGTTAATGAGGGTTGCTGTTGGAA 5550839 Query 75246 TCCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGT 75305 | || ||| ||||||||||||| | | || || ||| |||||| ||| | || Sbjct 5550838 TTCATAAGGATGACATTGATTCTGCTATAAAAACTTATCACATGATGTCTCAAAGATGGT 5550779 Query 75306 TCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 ||| ||| || | || || || ||||||||||| |||||||| || || Sbjct 5550778 TCACTCATGCTTCTCCGACACTTTTCAATGCTGGAACACCAAGGCCTCA 5550730 >seq7 Length=10072460 Score = 87.8 bits (96), Expect = 2e-12 Identities = 188/281 (67%), Gaps = 10/281 (4%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || || || |||||||| || | || |||| | || || ||| | || || || Sbjct 7797278 CCTGGCACTGGAAAGACGCTGTTGGCTAGAGCAGTAGCAGGAGAAGCCGGGGTGCCGTTT 7797219 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || ||| | || || | ||||||||| |||| ||||| || ||||| || || Sbjct 7797218 TTCTCATGCGCAGCTTCAGAGTTTGTGGAGCTGTTCGTTGGAGTAGGTGCGTCCAGAGTA 7797159 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAA-----CCATGTATTGTCTTCATTGATG 175489 | ||| | || || | || |||||| | ||||| ||||| ||||| |||| Sbjct 7797158 AGGGATTTATTCGAGAAGGC-----AAAATCGAAGGCGCCATGCATTGTATTCATAGATG 7797104 Query 175490 AGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAG 175549 |||||||||| || || | || | | |||||| | || |||||| ||||||| Sbjct 7797103 AGATTGATGCTGTTGGGAGACAGAGAGGAGCTGGTCTTGGAGGAGGAAATGATGAGAGAG 7797044 Query 175550 AACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590 | || ||||| ||||| | | || ||||||||||| ||| Sbjct 7797043 AGCAGACAATCAATCAGTTGTTGACTGAGATGGATGGATTT 7797003 >seq19 Length=3572271 Score = 84.2 bits (92), Expect = 3e-11 Identities = 171/250 (68%), Gaps = 8/250 (3%) Strand=Plus/Minus Query 175402 GAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAA 175461 |||||||||||||| ||||| || ||| || | ||||| ||| | | || | Sbjct 2132909 GAGATGTTTGTTGGAGTGGGAGCTTCAAGAGTGAGGGATCTGTTTAACAAGGCAAAGGCT 2132850 Query 175462 AATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCT 175521 |||| ||| || | || ||||| |||||||||||||| || || | | | | | || Sbjct 2132849 AATCCACCGTGCTTGGTGTTCATAGATGAGATTGATGCTGTTGGAAGGGAGAGAGGAACT 2132790 Query 175522 GGTGGTATG-CCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGAT 175580 ||| || | || |||||| ||||| || ||||| | |||||| | || || || || Sbjct 2132789 GGT-ATAGGTGGAGGAAATGATGAGAGGGAGCAAACTCTAAATCAATTGCTAACTGAAAT 2132731 Query 175581 GGATGGCTT---TGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGA 175637 |||||| || || || | ||||| || | || ||||| || |||||| | || Sbjct 2132730 GGATGGTTTTACTGGCA---ACACTGGAGTTATCGTCATTGCTGCTACTAATAGGCCTGA 2132674 Query 175638 TATCCTTGAT 175647 || |||||| Sbjct 2132673 AATTCTTGAT 2132664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596524305453120