Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq9 107 3e-18 seq2 107 3e-18 seq1649 84.2 4e-11 >seq9 Length=8984705 Score = 107 bits (118), Expect = 3e-18 Identities = 166/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || ||||| | | || | |||| ||| | || | ||| || ||| || Sbjct 7052860 AATTTGCATGCCACCACGGAGCCGCAAAACCAAATGGAGGGTTGACTCCTTCTGAATGTT 7052801 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 |||||| | | ||||| ||| || | |||||||||||||||||||| ||||| || Sbjct 7052800 ATAGTCTGCAAGGGTTCTGCCATCTTCAAGCTGTTTTCCGGCAAAAATTAACCTCTGCTG 7052741 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || || || || || || || || || || || | || | ||| || ||||| || Sbjct 7052740 GTCTGGTGGGATACCCTCCTTGTCCTGAATCTTCGCCTTCACATTATCGATGGTATCTGA 7052681 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||| || |||| ||| || ||||| || || || ||||| |||||||| ||||| Sbjct 7052680 ACTCTCCACCTCTAAAGTGATGGTTTTCCCAGTGAGAGTTTTCACAAATATCTGCAT 7052624 Score = 105 bits (116), Expect = 1e-17 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || || ||||| || ||||| || | ||||||||||| ||||| || ||||| || Sbjct 7053007 ATCCTCCAACTGTTTGCCAGCAAATATCAGCCTCTGTTGATCTGGAGGGATACCTTCCTT 7052948 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 || || || || | ||||| ||| ||| ||||| ||| ||||||||| | || || Sbjct 7052947 GTCCTGGATCTTAGCTTTTACATTGTCAATGGTATCAGAACTCTCAACTTCCAAGGTAAT 7052888 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||| || || || || || || ||||| |||||||| Sbjct 7052887 AGTCTTTCCAGTGAGGGTCTTGACAAAAATTTGCAT 7052852 Score = 93.3 bits (102), Expect = 8e-14 Identities = 164/238 (69%), Gaps = 1/238 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || ||||| | | ||| | |||| ||| | || | ||| || || || Sbjct 7045970 AATTTGCATGCCACCACGGAGTCGCAAAACCAAATGGAGGGTTGACTCCTTCTGGATGTT 7045911 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 |||||| | | ||||| ||| || | |||||||| ||||||||||| ||||| || Sbjct 7045910 ATAGTCTGCAAGGGTTCTGCCATCTTCAAGCTGTTTTCCAGCAAAAATTAACCTCTGCTG 7045851 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || || || || || || || || || || || | || | ||| || ||||| || Sbjct 7045850 GTCTGGTGGGATACCCTCCTTGTCCTGAATCTTTGCCTTCACATTGTCGATGGTATCCGA 7045791 Query 193304 AGACTCAACTTCTAGAGT-TATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||| || || | ||| || ||||| || || || ||||| |||||||| ||||| Sbjct 7045790 ACTCTCCACCTCCAAAGTGGATGGTTTTCCCGGTGAGAGTTTTCACAAATATCTGCAT 7045733 Score = 91.5 bits (100), Expect = 3e-13 Identities = 116/157 (74%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || || ||||| |||||||| || | ||||||||||| ||||| || ||||| || Sbjct 7046117 ATCCTCCAACTGTTTGCCGGCAAATATCAGCCTCTGTTGATCTGGAGGGATACCTTCCTT 7046058 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 || || || || | ||||| ||| ||| ||||| ||| ||||||||| | || || Sbjct 7046057 GTCCTGGATCTTAGCTTTTACATTGTCAATGGTATCAGAACTCTCAACTTCCAAGGTAAT 7045998 Query 193325 AGTTTTACCTGTTAGCGTTTTTACA-AATATTTGCAT 193360 ||| || | || || | || ||| || |||||||| Sbjct 7045997 AGTCTT-TCAGTGAGGGGCTTGACACAAAATTTGCAT 7045962 >seq2 Length=14367614 Score = 107 bits (118), Expect = 3e-18 Identities = 166/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || ||||| | | || || |||| || | || | ||| || ||| || Sbjct 9074741 AATTTGCATCCCACCACGAAGACGGAGAACCAAGTGAAGGGTTGACTCCTTTTGAATGTT 9074682 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||| || | | || || ||| || | ||||||||| |||||||| || ||||| || Sbjct 9074681 ATAATCAGCAAGTGTCCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAACCTCTGCTG 9074622 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || || || || || |||||||| || || |||| || | ||| |||||| || || Sbjct 9074621 GTCTGGTGGGATACCCTCTTTATCCTGAATCTTGGCCTTGACATTGTCAATAGTGTCTGA 9074562 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||| || || | ||| || ||||||||||| || || || ||||| |||||||| Sbjct 9074561 GCTCTCTACCTCCAAAGTGATCGTTTTACCTGTGAGAGTCTTGACAAAGATTTGCAT 9074505 Score = 104 bits (114), Expect = 4e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || |||||||| | || || | | || || | ||||| || ||||| || | || Sbjct 9074458 ATGTTATAGTCAGCTAGGGTGCGACCGTCTTCAAGCTGTTTGCCAGCAAAGATAAGCCTT 9074399 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 |||||||||||||| |||||||| || ||||| || || | ||| | ||| ||| ||| Sbjct 9074398 TGTTGATCAGGAGGGATTCCTTCCTTGTCTTGGATCTTAGCTTTGACATTATCAATTGTA 9074339 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || || |||||| || | || ||||| || ||||| || || || ||||| |||||| Sbjct 9074338 TCAGAGCTCTCAACCTCCAAGGTGATAGTCTTTCCTGTGAGTGTCTTGACAAAGATTTGC 9074279 Query 193359 AT 193360 || Sbjct 9074278 AT 9074277 >seq1649 Length=3542 Score = 84.2 bits (92), Expect = 4e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || || ||||| || ||||| || | ||||||||||| ||||| || ||||| || Sbjct 511 ATCCTCCAACTGTTTGCCAGCAAATATCAGCCTCTGTTGATCTGGAGGGATACCTTCCTT 452 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 || || || || | ||||| ||| ||| ||||| ||| ||||||||| | || || Sbjct 451 GTCCTGGATCTTAGCTTTTACATTGTCAATGGTATCAGAACTCTCAACTTCCAAGGTAAT 392 Query 193325 AGTTTTACC 193333 ||| || || Sbjct 391 AGTCTTTCC 383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899586093739680