Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq14 104 3e-17 seq9 102 1e-16 seq10 98.7 1e-15 seq26 93.3 6e-14 seq2 91.5 2e-13 seq4 87.8 3e-12 >seq14 Length=6982396 Score = 104 bits (114), Expect = 3e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || |||| || ||||| || || || ||||| ||| ||| Sbjct 1120244 ATGCAAATCTTTGTCAAGACCCTGACGGGTAAAACCATAACCTTGGAAGTTGAAAGTTCC 1120185 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || |||||||| || || || || || ||||| || || ||||| || Sbjct 1120184 GACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAAGGAATTCCGCCAGATCAG 1120125 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||| | || | ||| || ||||||||||| || ||||||| | |||||||| Sbjct 1120124 CAAAGGCTTATCTTTGCAGGGAAGCAGCTCGAGGACGGTCGAACTTTGGCTGATTATAAC 1120065 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAG 156037 || |||||| |||| |||||||| || || || Sbjct 1120064 ATTCAGAAAGAGTCGACCCTTCATTTGGTTTTGAG 1120030 >seq9 Length=8984705 Score = 102 bits (112), Expect = 1e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| | ||||| |||||||| ||||| || || || || || || || Sbjct 7046188 AATGCAGATTTTTGTGAAAACCTTGACTGGTAAAACCATCACTTTGGAGGTGGAGAGCTC 7046247 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | ||| ||||| ||| || || |||||||| || || || || || || || Sbjct 7046248 TGACACAATTGACAACGTCAAAGCCAAGATCCAAGATAAGGAGGGTATCCCACCTGACCA 7046307 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| || ||||||| || || ||||||||||||||| || || | |||| |||| Sbjct 7046308 ACAGAGGTTGATTTTCGCTGGAAAGCAGCTCGAAGATGGGAGGACACTTGCAGACTATA- 7046366 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 | ||||||| | || || ||||| || || Sbjct 7046367 -ACATCCAAAAGATCAACCCTGCATTTGGTTTT 7046398 >seq10 Length=8461613 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| | || || |||||||||||||| || || || || || ||| ||| Sbjct 2238794 AATGCAGATTTTTGTCAAGACCTTGACTGGAAAAACAATCACCTTGGAGGTGGAAAGTTC 2238735 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| || ||||| || || || || ||||| ||||| || || ||||| || Sbjct 2238734 GGATACAATCGATAACGTCAAGGCAAAGATTCAGGATAAGGAAGGAATCCCCCCAGATCA 2238675 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||||| | || | |||||| || || | || ||| || |||||| | |||||||| Sbjct 2238674 GCAAAGGCTTATCTTTGCCGGGAAACAATTGGAGGATGGGAGGACTTTAGCTGATTATAA 2238615 Query 156002 TATATCCAAAGAGGCGACGCTTCA 156025 || |||||| | || ||||| Sbjct 2238614 CATTCAGAAAGAGTCTACCCTTCA 2238591 >seq26 Length=2022356 Score = 93.3 bits (102), Expect = 6e-14 Identities = 300/463 (65%), Gaps = 11/463 (2%) Strand=Plus/Minus Query 17861 GCTTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATT 17920 ||||| | ||| ||||| ||| |||||||||||||||| || || |||| ||| || || Sbjct 1746997 GCTTTCTGGTACTCTCCAACTCTTTTCTCGAAGAAATTGGTTTTGCCTTGCAACGAAATC 1746938 Query 17921 AAATTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTAT--TAATTCGT 17978 | | ||| ||||||| || |||| || ||| | || ||| ||| | Sbjct 1746937 AGTTCCATCCAATCAAAAGGGTTAGCCACATTGTAAA--TCCTCCCGTACCCTAACGCCC 1746880 Query 17979 ATAATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTA 18038 || || | |||||| || || |||| || || ||||| || | ||||| || | Sbjct 1746879 CCAACAACCGATCTGCGACGAACTCGATGTACTGACTCATCAGCTCTCCGTTCATCCCAA 1746820 Query 18039 GTAGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTA 18098 | | | | || ||||||||| | ||| || ||||||| || || | || | | Sbjct 1746819 CCAATGCGCACGGCAGAGCATCACATACAAACTCCCTCTCTATATCCACTGCGTCCCTCA 1746760 Query 18099 TTATGTTTATTACCCTAGATTTTGGCAATTTATTAATTATGTGATTAT--AATATAATAA 18156 ||| | | || || || || || | | || | | || | || Sbjct 1746759 CTATCCCTCTCACGCTCTCTTCGCTCAGCTT-----TGACCGGAGGAGGGAGTACAGCAA 1746705 Query 18157 ACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAA 18216 || || ||||| || | ||||||||||| || ||||| ||||| || ||||| Sbjct 1746704 GCAAGCGAAATCGCAATGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGAAAGTTAA 1746645 Query 18217 CCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAA 18276 || ||||||| || | ||||||| ||||||||||| |||||| | ||| ||||| Sbjct 1746644 TCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCGCGCAGAAACTTCCAGAGAAGAA 1746585 Query 18277 TATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAA 18319 || || || ||||| || || || |||| | ||| || ||| Sbjct 1746584 AATCCCTTCCACGCAAGCAAAAGCGATTAGCCGTTCGGCGAAA 1746542 >seq2 Length=14367614 Score = 91.5 bits (100), Expect = 2e-13 Identities = 92/118 (78%), Gaps = 4/118 (3%) Strand=Plus/Plus Query 155910 ATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAG 155969 || || |||||||||||||| ||||| || || || || ||||||| ||| ||||||||| Sbjct 7189291 ATCCAGGATAAAGAAGGCATCCCTCCTGATCAGCAGAGGTTGATTTTTGCTGGTAAGCAG 7189350 Query 155970 CTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAA--GAGGCGACGCTTCA 156025 || |||||| | ||||| | | ||||||| | ||||||| ||| | || ||||| Sbjct 7189351 CTGGAAGATGGCCGAACTCTTGCTGATTATA--ACATCCAAAAGGAGTCCACACTTCA 7189406 Score = 89.7 bits (98), Expect = 8e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | || || ||||||||||| || | ||||| || || ||| || Sbjct 9074961 ATGCAGATATTTGTGAAGACCTTGACTGGAAAGACAGTAACATTGGAGGTTGAAAGCTCG 9075020 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || ||||| || || || || || ||||| || |||||||| || Sbjct 9075021 GACACCATTGATAATGTGAAGGCAAAGATCCAGGACAAGGAAGGGATCCCTCCAGACCAG 9075080 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||||| ||| || |||||||| || ||| || ||| | |||| || || Sbjct 9075081 CAGAGGTTGATTTTTGCTGGGAAGCAGCTGGAGGATGGGAGGACTCTGGCAGACTACAAC 9075140 Query 156003 AT 156004 || Sbjct 9075141 AT 9075142 >seq4 Length=12062019 Score = 87.8 bits (96), Expect = 3e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | ||||| ||||| || ||||||||||| | || || || ||| Sbjct 4154677 ATGCAGATTTTCGTCAAAACCTTGACCGGGAAAACTATTACTCTGGAGGTAGAGAGTTCG 4154736 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||||| || ||||| || ||||| ||||| || ||||| || || Sbjct 4154737 GATACAATTGATAACGTCAAGGCAAAAATCCAGGATAAGGAAGGGATCCCTCCGGATCAG 4154796 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | ||||| |||||| | || || ||| || | | ||||| ||| Sbjct 4154797 CAGAGGTTGATATTCGCCGGGAAGCAGTTGGAGGACGGCAGGACCCTTGCGGATTACAAT 4154856 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 || || ||| | || ||||| Sbjct 4154857 ATCCAGAAGGAGTCCACTCTTCA 4154879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731816432618400