Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq9 109 1e-18 seq1649 105 1e-17 seq10 105 1e-17 seq14 96.9 7e-15 seq4 89.7 1e-12 seq2 87.8 4e-12 >seq9 Length=8984705 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| |||||||| | || | || | || | ||| || |||||| |||||| Sbjct 7052625 ATGCCACCCCTAAGACGAAGGACAAGGTGGAGGGTGGACTCCTTCTGGATATTGTAATCA 7052566 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || |||| || | ||||||||||||||||| | |||||||| || || Sbjct 7052565 GCAAGGGTGCGGCCATCCTCTAGCTGTTTACCAGCAAAGATAAGCCTCTGTTGGTCTGGC 7052506 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || ||||| || || ||| |||||| |||| || || ||| Sbjct 7052505 GGGATCCCCTCCTTGTCTTGGATCTTGGCTTTGACATTATCAATAGTGTCAGAGCTTTCC 7052446 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| || ||||| | ||||| | ||| |||||||| Sbjct 7052445 ACCTCAAGGGTGATGGTCTTGCCAGTAAGGGTTTTCACAAAGATCTGCAT 7052396 Score = 104 bits (114), Expect = 5e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || |||||||| || || || ||||| | || | ||||| | ||| ||||| || Sbjct 7046416 ATCCCTCCTCTAAGGCGCAAAACCAAATGCAGGGTTGA-TCTTTTG-GATGTTATAGTCT 7046359 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||| | |||| || | || || ||||| || || || |||||||| |||||| Sbjct 7046358 GCAAGTGTCCTCCCATCTTCGAGCTGCTTTCCAGCGAAAATCAACCTCTGTTGGTCAGGT 7046299 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || |||||||| || || ||| || || || | || || || Sbjct 7046298 GGGATACCCTCCTTATCTTGGATCTTGGCTTTGACGTTGTCAATTGTGTCAGAGCTCTCC 7046239 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || | ||| |||||||||||||| || ||||| | ||| ||||||||| Sbjct 7046238 ACCTCCAAAGTGATGGTTTTACCAGTCAAGGTTTTCACAAAAATCTGCATT 7046188 Score = 96.9 bits (106), Expect = 7e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 192319 AGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGT 192378 ||||| | || || || | || | |||||| |||||| ||||| | | ||| | Sbjct 7053069 AGACGCAGCACCAAGTGGAGGGTTGACTCTTTTTGGATATTGTAATCTGCAAGTGTCCTC 7053010 Query 192379 TCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCT 192438 |||| ||||| ||||| |||||||| || | ||||||||||| || || || ||||| Sbjct 7053009 CCATCCTCCAACTGTTTGCCAGCAAATATCAGCCTCTGTTGATCTGGAGGGATACCTTCC 7052950 Query 192439 TTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTA 192498 || || || || ||| ||||||||| || | ||| || || ||||| | ||| Sbjct 7052949 TTGTCCTGGATCTTAGCTTTTACATTGTCAATGGTATCAGAACTCTCAACTTCCAAGGTA 7052890 Query 192499 ATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || ||||| | || || | ||| || ||||| Sbjct 7052889 ATAGTCTTTCCAGTGAGGGTCTTGACAAAAATTTGCAT 7052852 Score = 96.9 bits (106), Expect = 7e-15 Identities = 165/233 (71%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || |||||||| || || || ||||| | || | ||| || ||| ||||| || Sbjct 7053307 ATCCCTCCTCTAAGGCGCAAAACCAAATGCAGGGTTGACTCCTTTTGGATGTTATAGTCT 7053248 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||| | | |||| || | || || |||||||| || || || ||||| |||||| Sbjct 7053247 GCAAGTGTCC-TCCATCTTCAAGCTGCTTCCCAGCAAAAATCAACCTTTGTTGGTCAGGT 7053189 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTA--TAGAATCTGACGATT 192484 || || ||| ||| |||||| || || ||| || || || | | | || || | Sbjct 7053188 GGGATACCTCCTT-ATCTTGGATCTTGGCTTTGACGTT-GTCAATTGGTGTCAGAGCTCT 7053131 Query 192485 CTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 | || || | |||||||||||||||||| || || || | ||| ||||||||| Sbjct 7053130 CCACCTCCAAAGTAATGGTTTTACCAGTCAAGGTCTTCACAAA-ATCTGCATT 7053079 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | || || || || ||||| | || | ||| || || ||||| || Sbjct 7052853 ATGCCACCACGGAGCCGCAAAACCAAATGGAGGGTTGACTCCTTCTGAATGTTATAGTCT 7052794 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | |||| |||| || | ||||| || ||||| ||||| ||||| || || ||| Sbjct 7052793 GCAAGGGTTCTGCCATCTTCAAGCTGTTTTCCGGCAAAAATTAACCTCTGCTGGTCTGGT 7052734 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || || || || || || |||||| || | |||||| || Sbjct 7052733 GGGATACCCTCCTTGTCCTGAATCTTCGCCTTCACATTATCGATGGTATCTGAACTCTCC 7052674 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || |||| ||| |||||||| ||||| | ||||| | |||||||||||| Sbjct 7052673 ACCTCTAAAGTGATGGTTTTCCCAGTGAGAGTTTTCACAAATATCTGCAT 7052624 Score = 93.3 bits (102), Expect = 8e-14 Identities = 132/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 |||||| || |||| | || || |||| |||||| | || ||||||||||| || || Sbjct 7046595 GATATTGTAGTCAGCCAGAGTGCGACCATCCTCCAAT-GCTTGCCAGCAAAGATCAACCT 7046537 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| || || || || || || || || || || || || ||| ||||| || | Sbjct 7046536 CTGCTGGTCTGGAGGAATCCCCTCCTTGTCCTGAATCTTTGCTTTCACATTGTCAATCGT 7046477 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||||| | ||| || || || || |||||||| ||||| || || || | ||||||||| Sbjct 7046476 GTCTGA-GCTTCAACCTCCAGGGTGATGGTTTTCCCAGTCAAGGTCTTGAAAAATATCTG 7046418 Query 192534 CAT 192536 ||| Sbjct 7046417 CAT 7046415 >seq1649 Length=3542 Score = 105 bits (116), Expect = 1e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || |||||||| || || || ||||| | || | ||| || ||| ||||| || Sbjct 813 ATCCCTCCTCTAAGGCGCAAAACCAAATGCAGGGTTGACTCCTTTTGGATGTTATAGTCT 754 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||| | |||| || | || || |||||||| || || || ||||| |||||| Sbjct 753 GCAAGTGTCCTCCCATCTTCAAGCTGCTTCCCAGCAAAAATCAACCTTTGTTGGTCAGGT 694 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || |||||||| || || ||| || || || | || || || Sbjct 693 GGGATACCCTCCTTATCTTGGATCTTGGCTTTGACGTTGTCAATTGTGTCAGAGCTCTCC 634 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || | |||||||||||||||||| || || || | ||| ||||||||| Sbjct 633 ACCTCCAAAGTAATGGTTTTACCAGTCAAGGTCTTCACAAAAATCTGCATT 583 Score = 91.5 bits (100), Expect = 3e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 |||||| || |||| | || || |||| ||||| || || ||||||||||| || || Sbjct 994 GATATTGTAGTCAGCCAGAGTGCGACCATCCTCCAACTGCTTGCCAGCAAAGATCAACCT 935 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| || || || || || || || || || || || || ||| ||||| || | Sbjct 934 CTGCTGGTCTGGAGGAATCCCCTCCTTGTCCTGAATCTTTGCTTTCACATTGTCAATCGT 875 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||||| || || || || || |||||||| ||||| || || || | ||||||||| Sbjct 874 GTCTGAGCTCTCAACCTCCAGGGTGATGGTTTTCCCAGTCAAGGTCTTGACAAATATCTG 815 Query 192534 CAT 192536 ||| Sbjct 814 CAT 812 Score = 87.8 bits (96), Expect = 4e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 192319 AGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGT 192378 ||||| | || || || | || | |||||| |||||| ||||| | | ||| | Sbjct 573 AGACGCAGCACCAAGTGGAGGGTTGACTCTTTTTGGATATTGTAATCTGCAAGTGTCCTC 514 Query 192379 TCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCT 192438 |||| ||||| ||||| |||||||| || | ||||||||||| || || || ||||| Sbjct 513 CCATCCTCCAACTGTTTGCCAGCAAATATCAGCCTCTGTTGATCTGGAGGGATACCTTCC 454 Query 192439 TTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTA 192498 || || || || ||| ||||||||| || | ||| || || ||||| | ||| Sbjct 453 TTGTCCTGGATCTTAGCTTTTACATTGTCAATGGTATCAGAACTCTCAACTTCCAAGGTA 394 Query 192499 ATGGTTTTACCAG 192511 || || || |||| Sbjct 393 ATAGTCTTTCCAG 381 >seq10 Length=8461613 Score = 105 bits (116), Expect = 1e-17 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 192340 GTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCA 192399 |||| |||||| || |||||||||| ||| || | |||| ||||||||||| || Sbjct 2238597 GTAGACTCTTTCTGAATGTTATAATCAGCTAAAGTCCTCCCATCCTCCAATTGTTTCCCG 2238656 Query 192400 GCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTT 192459 |||||||| | || || ||||| || || |||||||| ||||| || || || || Sbjct 2238657 GCAAAGATAAGCCTTTGCTGATCTGGGGGGATTCCTTCCTTATCCTGAATCTTTGCCTTG 2238716 Query 192460 ACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTT 192519 || ||| || | ||| || ||| || || | || || ||||| ||||| || || Sbjct 2238717 ACGTTATCGATTGTATCCGAACTTTCCACCTCCAAGGTGATTGTTTTTCCAGTCAAGGTC 2238776 Query 192520 TTAATAAATATCTGCATT 192537 || | ||| ||||||||| Sbjct 2238777 TTGACAAAAATCTGCATT 2238794 >seq14 Length=6982396 Score = 96.9 bits (106), Expect = 7e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||| || || || | || | || | ||| || ||||| ||||||| Sbjct 1119789 ACCACCACGAAGGCGCAAGACCAGGTGAAGGGTGGACTCCTTCTGAATATTGTAATCAGC 1119848 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || || | | |||| |||||||| || |||||||| || || || || ||||| ||||| Sbjct 1119849 CAAAGTCCTTCCATCTTCCAATTGCTTCCCAGCAAAAATCAACCTTTGCTGATCTGGTGG 1119908 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || ||||| || || || || || || |||||| || | ||| || || || Sbjct 1119909 AATCCCTTCCTTGTCCTGAATCTTTGCCTTAACATTATCAATCGTATCCGAGCTCTCCAC 1119968 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || | |||||||||||| || || | || || | || |||||||| Sbjct 1119969 CTCCAAAGTAATGGTTTTCCCTGTCAGAGTCTTGACGAAAATCTGCAT 1120016 >seq4 Length=12062019 Score = 89.7 bits (98), Expect = 1e-12 Identities = 163/239 (68%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| || | ||||| | ||| | || | ||| | || || |||||| ||||| Sbjct 4154450 ATACCGCCACGGAGACGGAGTACCAGGTGGAGAGTCGATTCCTTTTGGATATTGTAATCC 4154391 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||||| | || || | ||| || || || ||||| || | |||||||||||| Sbjct 4154390 GCAAGGGTTCGGCCGTCTTCAAGTTGCTTGCCGGCGAAGATCAAGCGCTGTTGATCAGGA 4154331 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || || || || || || | ||||| || Sbjct 4154330 GGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCTGAGCTCTCC 4154271 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTATTAGA 192545 || || || || |||||||| || ||||| ||||| | || |||||||| || || || Sbjct 4154270 ACCTCGAGGGTGATGGTTTTGCCGGTTAAGGTTTTCACGAAGATCTGCATCTTGTTCGA 4154212 Score = 87.8 bits (96), Expect = 4e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||| || | || | || | |||| ||| || ||| || ||||| | Sbjct 4155132 ACCACCGCGAAGGCGAAGGACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCTGC 4155073 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | || || | || ||||| || || ||||| ||||| | ||||| ||||||||||| Sbjct 4155072 AAGAGTGCGCCCGTCCTCCAACTGCTTCCCAGCGAAGATGAGCCTCTGCTGATCAGGTGG 4155013 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || || || |||||||| ||||| ||| |||||| || | ||| || || || Sbjct 4155012 AATCCCCTCCTTATCTTGAATTTTTGCTTTCACATTATCGATTGTATCAGAACTCTCCAC 4154953 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| || || || || | || || | || |||||||| Sbjct 4154952 CTCAAGCGTAATCGTCTTTCCGGTCAGCGTCTTCACGAAGATCTGCAT 4154905 >seq2 Length=14367614 Score = 87.8 bits (96), Expect = 4e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| ||||| |||| || || || | || || | ||||| ||||||||||| | || Sbjct 9074459 GATGTTATAGTCAGCTAGGGTGCGACCGTCTTCAAGCTGTTTGCCAGCAAAGATAAGCCT 9074400 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||||||||||| || |||||||| || ||||| || ||| ||| |||||| || | Sbjct 9074399 TTGTTGATCAGGAGGGATTCCTTCCTTGTCTTGGATCTTAGCTTTGACATTATCAATTGT 9074340 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||| || || || || | || || || || || || | ||| || | ||| || || Sbjct 9074339 ATCAGAGCTCTCAACCTCCAAGGTGATAGTCTTTCCTGTGAGTGTCTTGACAAAGATTTG 9074280 Query 192534 CAT 192536 ||| Sbjct 9074279 CAT 9074277 Score = 84.2 bits (92), Expect = 4e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| |||||||||| | ||||| |||| |||| || ||||||||||| || || || Sbjct 7189386 GATGTTATAATCAGCAAGAGTTCGGCCATCTTCCAGCTGCTTACCAGCAAAAATCAACCT 7189327 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTAT 192449 ||| |||||||| || || ||||||||||| || || Sbjct 7189326 CTGCTGATCAGGAGGGATGCCTTCTTTATCCTGGAT 7189291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984403384689900