Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq9 104 4e-17 seq1649 102 1e-16 seq14 100 5e-16 seq10 91.5 3e-13 seq2 91.5 3e-13 seq26 89.7 9e-13 >seq9 Length=8984705 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || || || || ||||| | || | ||| || ||| ||||| ||| Sbjct 7052853 ATGCCACCACGGAGCCGCAAAACCAAATGGAGGGTTGACTCCTTCTGAATGTTATAGTCT 7052794 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || | || || | ||||| || ||||||||||| ||||| ||||| ||| Sbjct 7052793 GCAAGGGTTCTGCCATCTTCAAGCTGTTTTCCGGCAAAAATTAACCTCTGCTGGTCTGGT 7052734 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || || || || || || |||||| || |||||||| || Sbjct 7052733 GGGATACCCTCCTTGTCCTGAATCTTCGCCTTCACATTATCGATGGTATCTGAACTCTCC 7052674 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || |||| ||| |||||||| ||||| | ||||| | ||||||||||| Sbjct 7052673 ACCTCTAAAGTGATGGTTTTCCCAGTGAGAGTTTTCACAAATATCTGCAT 7052624 Score = 98.7 bits (108), Expect = 2e-15 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || |||||||| || || || ||||| | || | ||||| | | | ||||| ||| Sbjct 7046416 ATCCCTCCTCTAAGGCGCAAAACCAAATGCAGGGTTGA-TCTTTTGGA-TGTTATAGTCT 7046359 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | | | || || | || || ||||| ||||| || ||||||||||||||| Sbjct 7046358 GCAAGTGTCCTCCCATCTTCGAGCTGCTTTCCAGCGAAAATCAACCTCTGTTGGTCAGGT 7046299 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || |||||||| || || ||| || || || || || || || Sbjct 7046298 GGGATACCCTCCTTATCTTGGATCTTGGCTTTGACGTTGTCAATTGTGTCAGAGCTCTCC 7046239 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || | ||| |||||||||||||| || ||||| | || ||||||||| Sbjct 7046238 ACCTCCAAAGTGATGGTTTTACCAGTCAAGGTTTTCACAAAAATCTGCATT 7046188 Score = 96.9 bits (106), Expect = 6e-15 Identities = 165/233 (71%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || |||||||| || || || ||||| | || | ||| || || ||||| ||| Sbjct 7053307 ATCCCTCCTCTAAGGCGCAAAACCAAATGCAGGGTTGACTCCTTTTGGATGTTATAGTCT 7053248 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || | | || || | || || ||||||||||| || || |||||||||||| Sbjct 7053247 GCAAGTG-TCCTCCATCTTCAAGCTGCTTCCCAGCAAAAATCAACCTTTGTTGGTCAGGT 7053189 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTA--TAGTATCTGACGATT 172017 || || || || |||||||| || || ||| || || || | | || || || | Sbjct 7053188 GGGATACC-TCCTTATCTTGGATCTTGGCTTTGACGTT-GTCAATTGGTGTCAGAGCTCT 7053131 Query 172018 CTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 | || || | |||||||||||||||||| || || || | || ||||||||| Sbjct 7053130 CCACCTCCAAAGTAATGGTTTTACCAGTCAAGGTCTTCA-CAAAATCTGCATT 7053079 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 |||||||||||||| || | ||||||||||| || || || || || || ||||| || Sbjct 7052541 TGTTTACCAGCAAAGATAAGCCTCTGTTGGTCTGGCGGGATCCCCTCCTTGTCTTGGATC 7052482 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 || ||| |||||| ||||| || || ||| || || || || ||||| || ||| Sbjct 7052481 TTGGCTTTGACATTATCAATAGTGTCAGAGCTTTCCACCTCAAGGGTGATGGTCTTGCCA 7052422 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 || | ||||| | || |||||||| Sbjct 7052421 GTAAGGGTTTTCACAAAGATCTGCAT 7052396 Score = 84.2 bits (92), Expect = 4e-11 Identities = 158/231 (68%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||||| || || ||||| | || | ||| || || ||||| ||| Sbjct 7045963 ATGCCACCACGGAGTCGCAAAACCAAATGGAGGGTTGACTCCTTCTGGATGTTATAGTCT 7045904 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || | || || | ||||| |||||||||||||| ||||| ||||| ||| Sbjct 7045903 GCAAGGGTTCTGCCATCTTCAAGCTGTTTTCCAGCAAAAATTAACCTCTGCTGGTCTGGT 7045844 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || || || || || || ||||| || ||||| || || Sbjct 7045843 GGGATACCCTCCTTGTCCTGAATCTTTGCCTTCACATTGTCGATGGTATCCGAACTCTCC 7045784 Query 172020 ACTTCTAGAGT-AATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | ||| |||||||| || || | ||||| | ||||||||||| Sbjct 7045783 ACCTCCAAAGTGGATGGTTTTCCCGGTGAGAGTTTTCACAAATATCTGCAT 7045733 Score = 84.2 bits (92), Expect = 4e-11 Identities = 113/155 (73%), Gaps = 2/155 (1%) Strand=Plus/Minus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || |||||| | || |||||||| || || ||||| ||||| || || || || || || Sbjct 7046567 TCCTCCAAT-GCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATCCCCTCCTTG 7046509 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 || || || || ||| ||||| || || ||||| | ||| || || || || ||| Sbjct 7046508 TCCTGAATCTTTGCTTTCACATTGTCAATCGTGTCTGA-GCTTCAACCTCCAGGGTGATG 7046450 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| ||||| || || || | ||||||||||| Sbjct 7046449 GTTTTCCCAGTCAAGGTCTTGAAAAATATCTGCAT 7046415 >seq1649 Length=3542 Score = 102 bits (112), Expect = 1e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || |||||||| || || || ||||| | || | ||| || || ||||| ||| Sbjct 813 ATCCCTCCTCTAAGGCGCAAAACCAAATGCAGGGTTGACTCCTTTTGGATGTTATAGTCT 754 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | | | || || | || || ||||||||||| || || |||||||||||| Sbjct 753 GCAAGTGTCCTCCCATCTTCAAGCTGCTTCCCAGCAAAAATCAACCTTTGTTGGTCAGGT 694 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || |||||||| || || ||| || || || || || || || Sbjct 693 GGGATACCCTCCTTATCTTGGATCTTGGCTTTGACGTTGTCAATTGTGTCAGAGCTCTCC 634 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || | |||||||||||||||||| || || || | || ||||||||| Sbjct 633 ACCTCCAAAGTAATGGTTTTACCAGTCAAGGTCTTCACAAAAATCTGCATT 583 >seq14 Length=6982396 Score = 100 bits (110), Expect = 5e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | ||| || || || | || | || | ||| || |||||| ||||| | Sbjct 1119789 ACCACCACGAAGGCGCAAGACCAGGTGAAGGGTGGACTCCTTCTGAATATTGTAATCAGC 1119848 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 |||| | | | || |||||||| || ||||||||||| || || || || || ||||| Sbjct 1119849 CAAAGTCCTTCCATCTTCCAATTGCTTCCCAGCAAAAATCAACCTTTGCTGATCTGGTGG 1119908 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || ||||| || || || || || || |||||| || ||||| || || || Sbjct 1119909 AATCCCTTCCTTGTCCTGAATCTTTGCCTTAACATTATCAATCGTATCCGAGCTCTCCAC 1119968 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || | |||||||||||| || || | || || | ||| |||||||| Sbjct 1119969 CTCCAAAGTAATGGTTTTCCCTGTCAGAGTCTTGACGAAAATCTGCAT 1120016 >seq10 Length=8461613 Score = 91.5 bits (100), Expect = 3e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 171873 GTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCA 171932 |||| |||||| ||| |||||||| | ||||| | | || ||||||||||| || Sbjct 2238597 GTAGACTCTTTCTGAATGTTATAATCAGCTAAAGTCCTCCCATCCTCCAATTGTTTCCCG 2238656 Query 171933 GCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTT 171992 ||||| || | || || || || || || |||||||| ||||| || || || || Sbjct 2238657 GCAAAGATAAGCCTTTGCTGATCTGGGGGGATTCCTTCCTTATCCTGAATCTTTGCCTTG 2238716 Query 171993 ACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTT 172052 || ||| || ||||| || ||| || || | || || ||||| ||||| || || Sbjct 2238717 ACGTTATCGATTGTATCCGAACTTTCCACCTCCAAGGTGATTGTTTTTCCAGTCAAGGTC 2238776 Query 172053 TTAATGAATATCTGCATT 172070 || | || ||||||||| Sbjct 2238777 TTGACAAAAATCTGCATT 2238794 >seq2 Length=14367614 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||| || | || || || | || | ||| || ||| |||||||| Sbjct 9074734 ATCCCACCACGAAGACGGAGAACCAAGTGAAGGGTTGACTCCTTTTGAATGTTATAATCA 9074675 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | | | | || || | |||||| ||||||||||| || ||||| ||||| ||| Sbjct 9074674 GCAAGTGTCCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAACCTCTGCTGGTCTGGT 9074615 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || |||||||| || || || || ||||| ||||| ||||| ||| Sbjct 9074614 GGGATACCCTCTTTATCCTGAATCTTGGCCTTGACATTGTCAATAGTGTCTGAGCTCTCT 9074555 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | ||| || |||||||| || | || || | || || ||||| Sbjct 9074554 ACCTCCAAAGTGATCGTTTTACCTGTGAGAGTCTTGACAAAGATTTGCAT 9074505 >seq26 Length=2022356 Score = 89.7 bits (98), Expect = 9e-13 Identities = 116/158 (73%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 39117 TATAGTAAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTA 39176 || || || || || ||||| ||| | |||||| || | || || || || || Sbjct 1746712 TACAGCAAGCAAGCGAAATCGCAATGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAG 1746653 Query 39177 AAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCA-AAACTACT 39235 ||||||||||| |||||||| || | |||||| | ||||||||| | ||| ||||| | Sbjct 1746652 AAAGTTAATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCG-CGCAGAAACTTCC 1746594 Query 39236 AGAAAAGAATATACCCTCCACACACGCAAATGCTATTA 39273 ||| ||||| || || ||||| || ||||| || |||| Sbjct 1746593 AGAGAAGAAAATCCCTTCCACGCAAGCAAAAGCGATTA 1746556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905067277549200