Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1 136 1e-26 seq7 132 1e-25 seq19 114 4e-20 seq4 98.7 3e-15 seq26 93.3 1e-13 seq11 89.7 2e-12 >seq1 Length=15579451 Score = 136 bits (150), Expect = 1e-26 Identities = 317/467 (68%), Gaps = 12/467 (3%) Strand=Plus/Minus Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGTTTGCTTAAATCCATCC 288948 ||||| || | ||| |||||||| | ||||| ||| | | | || ||| |||||| Sbjct 14793577 ATATCTGCCCGGTTAGTTGCTGCTATTACAATGATACCTGTGTTACCCTCAAAACCATCC 14793518 Query 288949 ATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCA 289008 || || |||| || ||||| ||||| ||||||||||| || ||| | | || | Sbjct 14793517 ATTTCAGTCAAAAGCTGGTTAAGAGTTTGCTCCCTTTCATCGTTCCCACCACCT--AT-A 14793461 Query 289009 CCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGA 289068 || | || ||| || | ||||||||||||||||| || | || | | ||| || Sbjct 14793460 CCAGT-TC-CTCTTTGCCGT-CCAACAGCATCAATTTCATCCACAAAGACAATACAGGGG 14793404 Query 289069 GAATTTTGTCTCGC--AATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACAT 289126 | ||| | | || ||| ||| | || | || || || || |||| ||||||| Sbjct 14793403 GCATTCTCCTTGGCCTTCTTGAAAAGA--TCACGAACTCGAGAGGCACCAACACCAACAA 14793346 Query 289127 ACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCT 289185 ||||||| ||||| |||||| | || | | || | ||||| ||| ||||| || || Sbjct 14793345 ACATTTCAACAAACTCAGAACCAGA-AATGGAGAAGAATGGCACACCAGCTTCACCAGCA 14793287 Query 289186 ACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTT 289245 | |||| | |||||||| ||||| || |||||||| || || | | ||||| || || Sbjct 14793286 ATTGCCTTGGCCAGAAGAGTCTTTCCAGTTCCAGGAGGGCCAACAAGAAGAACACCTTTA 14793227 Query 289246 GGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCC 289305 || | |||||| | | || || |||| || |||||| || || |||| ||| Sbjct 14793226 GGGATGCGAGCCCCAACTGCAGTAAATCTCTCTGGCTTCTTTAGGAACTCCACAACCTCC 14793167 Query 289306 TCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 | || | ||||| |||||| ||| || |||||| |||| || Sbjct 14793166 ATGAAATCCTGCTTTGCTTCATCAACTCCAGCAACATCATCAAACGT 14793120 >seq7 Length=10072460 Score = 132 bits (146), Expect = 1e-25 Identities = 337/506 (67%), Gaps = 14/506 (3%) Strand=Plus/Plus Query 288853 TCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGCC 288912 ||||||||||| | | ||| |||| || | | ||| | ||||| ||||||||| Sbjct 7796917 TCAAACCTACCGGGTCTCAATAAAGCTGCATCAAGCACATCCGGCCTGTTCGTTGCTGCC 7796976 Query 288913 AATACAACAATAGATTCGGT-TTGCTT--AAATCCATCCATACTTGTTAAAATTTGATTA 288969 || || | | | ||| || | | |||||||||||| || || | ||||| Sbjct 7796977 AAAACGATGACAC---CGGAATTCCCTGAAAATCCATCCATCTCAGTCAACAACTGATTG 7797033 Query 288970 AGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtttttttA 289029 | ||| || || || ||||||||| |||| | | ||| | | ||| | | | Sbjct 7797034 ATTGTCTGCTCTCTCTCATCATTT---CCTCCTCCAAGACCAGCTCCTCTC---TGTCTC 7797087 Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 |||||||||||||| || || ||||| | | || || | || | | || | | Sbjct 7797088 CCAACAGCATCAATCTCATCTATGAATACAATGCATGGCGCCTTCGATTTTGCCTTCTCG 7797147 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 ||||| || ||||| | ||| || || | ||||| ||| || ||||| || ||||| Sbjct 7797148 AATAAATCCCTTACTCTGGACGCACCTACTCCAACGAACAGCTCCACAAACTCTGAAGCT 7797207 Query 289150 GATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 | | ||| | || | || ||||| ||||||||||| || |||| || ||||| Sbjct 7797208 GCG-CATGAGAAAAACGGCACCCCGGCTTCTCCTGCTACTGCTCTAGCCAACAGCGTCTT 7797266 Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTT 289268 || || ||||| |||||| | |||| | || ||||| | || || || || | Sbjct 7797267 TCCAGTGCCAGGAGGTCCCACCAATAAACAACCTTTTGGGATCTTAGCTCCTAAAGCTGT 7797326 Query 289269 ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATC 289328 || || || ||| |||| || || || |||| ||| | ||||| ||||||||| || Sbjct 7797327 GTACTTGTCTGGGTTCTTCAAGAAATCAACAACTTCTTGGAGTTCCAATTTTGCCTGGTC 7797386 Query 289329 ACATCCTGCTACATCAGCAAAAGTAA 289354 | ||| ||||| |||||||| |||| Sbjct 7797387 AGCTCCAGCTACGTCAGCAAAGGTAA 7797412 >seq19 Length=3572271 Score = 114 bits (126), Expect = 4e-20 Identities = 280/420 (67%), Gaps = 16/420 (4%) Strand=Plus/Plus Query 288938 TAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAAC 288997 |||| |||||||| |||| | |||||| || ||||| ||||| ||||||||| | Sbjct 2132720 TAAAACCATCCATTTCAGTTAGCAATTGATTTAGAGTTTGCTCCCTCTCATCATTTCCTC 2132779 Query 288998 CTCTTGAATCAC--CCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAA 289055 | | | | || || || |||| || |||||||||||||| || || ||||| Sbjct 2132780 CACCTATACCAGTTCC---TCTCTCCCTT-----CCAACAGCATCAATCTCATCTATGAA 2132831 Query 289056 AATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCC 289115 | || ||||| | ||| | || | ||| | || || || | || ||||| Sbjct 2132832 CACCAAGCACGGTGGATTAGCCTTTGCCTTGTTAAACAGATCCCTCACTCTTGAAGCTCC 2132891 Query 289116 AAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGC 289175 | |||||| |||| |||| || || || | || | | || || | || || Sbjct 2132892 CACTCCAACAAACATCTCTATGAACTCTGATCCAGAAAGTGAAAAGAGAGGAACCCCCGC 2132951 Query 289176 TTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAG 289235 ||| ||||| | |||| | |||| | |||||| || || ||||| ||||| |||| || Sbjct 2132952 TTCTCCTGCAATTGCCTTTGCCATCAATGTCTTTCCAGTCCCAGGAGGTCCAACTAAAAG 2133011 Query 289236 AACTCCCTTTGGTACTTTTGC-CCCA--GCAGACTTATATTTCTCAGGGCTCTTTAAAAA 289292 ||||| || || | |||||| |||| |||| | | ||||| ||| | ||||| || Sbjct 2133012 CACTCCTTTAGGAATTTTTGCACCCACTGCAG---CAAACTTCTCTGGGGTTTTTAAGAA 2133068 Query 289293 TTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 || || || || | || || | || || |||||| || || |||||| |||||| Sbjct 2133069 CTCAACTATCTCTTGAAAATCTTGCTTAGCTTCATCAACACCAGCAACATCATTAAAAGT 2133128 >seq4 Length=12062019 Score = 98.7 bits (108), Expect = 3e-15 Identities = 215/317 (68%), Gaps = 4/317 (1%) Strand=Plus/Minus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAA-TTG 289087 ||||| |||||||| || ||||| || || | || |||| | ||| || || ||| Sbjct 9911583 ACCAATTGCATCAATCTCATCAATAAATATTATACTAGGAGCACATTGCCTTGCTTCTTG 9911524 Query 289088 CAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAG 289147 || | ||| || || | ||||| ||||| ||||||| |||| || | || |||||| Sbjct 9911523 GAACAAGTTC-CTCACCCTGGATGGTCCAACACCAACAAACATCTCCATGAAATCAGAAC 9911465 Query 289148 CGGATACTTGAATGAAT-GTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206 | |||| | || ||| | |||| | || || || ||| | || || || ||| Sbjct 9911464 CTGATA-TAGATAGAAAAGGTACACCCGACTCACCAGCAGTTGCTTTTGCTAGGAGGGTC 9911406 Query 289207 TTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGAC 289266 || ||||| || || || || | || ||| | || ||||| | |||||| || | Sbjct 9911405 TTTCCTGTACCTGGAGGGCCAACCAAAAGAGCACCTTTTGGAATTTTTGCTCCTAGTTCC 9911346 Query 289267 TTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCA 289326 | |||||||| ||| |||| | || | |||| ||| | || | ||| |||||| Sbjct 9911345 TCATATTTCTTCGGGTTCTTAAGGAAGTGCACAAACTCCATGATCTCTTGTTTGGCCTCA 9911286 Query 289327 TCACATCCTGCTACATC 289343 ||||| || |||||||| Sbjct 9911285 TCACAGCCAGCTACATC 9911269 >seq26 Length=2022356 Score = 93.3 bits (102), Expect = 1e-13 Identities = 271/412 (66%), Gaps = 19/412 (5%) Strand=Plus/Plus Query 133232 GCGTTTTTTGCTGCGAGTGATGGTATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGA 133291 || || ||||| || |||||||| || || |||||| | | ||||| ||| Sbjct 1746279 GCCTTCTTTGCAGCCTCCGATGGTATCGTCCTCGAAAATCTCGCCGTCCGGTTCATGAAG 1746338 Query 133292 GAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATC 133351 ||||| ||| | |||| || ||||| || ||||| | || || || || ||||||||| Sbjct 1746339 GAAGTCCAAATCTCCGAGGCTCGTGCGTTCTATGGCTTCCAAATCGCCATCGAAAATATC 1746398 Query 133352 CATTCTATCA--CATATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGC 133409 || || | ||| ||| ||| |||| ||||||||||| || || | | ||| Sbjct 1746399 CACTCCGAGATGTATAGTCTCCTC--CTTGAAACTTACATCAAGGACTCCAACGAAAAGA 1746456 Query 133410 ACAAACTATTCAACGCCATTAGCGA---ATTTCCTTGTATTAAAAAGAAATCTGACTGGG 133466 || || ||| ||||| | ||| | | || ||| | |||||| |||| |||| Sbjct 1746457 ACCGGCTCTTCCACGCCGT---CGAAACAGTGCCATGTGTGGCTAAGAAAGCTGAGTGGG 1746513 Query 133467 CTATTAAATGGATCCAGGACAAGCGTGCG---AGTTTTGCTACTCGTCTCGTTGCTTTTG 133523 | | ||||||||| ||| || || | ||| || || || | ||||||| Sbjct 1746514 CATTGAAATGGATC---GAC---GGTTCGGAAACTTTCGCCGAACGGCTAATCGCTTTTG 1746567 Query 133524 CTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGC 133583 || || || || ||||| ||| ||| |||||| | || |||||| | ||||||| Sbjct 1746568 CTTGCGTGGAAGGGATTTTCTTCTCTGGAAGTTTCTGCGCGATATTTTGGTTAAAAAAGC 1746627 Query 133584 GTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACGA 133635 | || | | |||||| | ||| || ||||| | || ||| | || || Sbjct 1746628 GCGGGTTAATGCCTGGATTAACTTTCTCAAACGAGTTAATCTCACGAGATGA 1746679 >seq11 Length=8132550 Score = 89.7 bits (98), Expect = 2e-12 Identities = 165/236 (70%), Gaps = 7/236 (3%) Strand=Plus/Plus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAA--TTG 289087 ||||| ||||||| ||| ||||| || || | |||| | | || || || | ||| Sbjct 121176 CCAACTGCATCAAGTTCATCAATAAATATAATCGACGGTGCAGATTTCCTTGCCACATTG 121235 Query 289088 CAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAG 289147 ||| | ||||| | || | |||||| |||||| ||| ||| ||||||||| || Sbjct 121236 AAAAGA--TCTCTAATTCGAGCTGCTCCTCTTCCAACAAACAATTCAACAAATTCACTAG 121293 Query 289148 CGGATACT-TGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206 | ||||| |||| || | || ||||| || |||||||| | || || | ||| Sbjct 121294 CTGATACGCTGAAAAAAGGA-ACTCCCGCTTCTCCAGCTACTGCACGAGCTAGTAATGTT 121352 Query 289207 TTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAG 289261 || |||||||||||||| ||| ||| || || || | || | |||||| ||||| Sbjct 121353 TTCCCTGTTCCAGGTGGACCCACTAGCAGTACACCTCTAGGCAATTTTGCTCCCAG 121408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471703058554938