Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq26 194 2e-43 >seq26 Length=2022356 Score = 194 bits (214), Expect = 2e-43 Identities = 221/294 (75%), Gaps = 2/294 (1%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||| || ||||||||||| |||||||| || || || | |||| | | |||| Sbjct 1746403 GAGTGGATATTTTCGATGGCGATTTGGAAGCCATAGAACGCACGAGCCTCGGAGATTTGG 1746344 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || ||||||||||||||| |||| || || ||| ||||| || ||| ||| || || Sbjct 1746343 ACTTCCTTCATGAACCGGACGGCGAGATTTTCGAGGACGATACCATCGGAGGCTGCAAAG 1746284 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || |||||||| |||| |||||||| ||| ||||| | || | |||||||| || Sbjct 1746283 AAGGCGAGGACGTGAGTGATGAAGTGGCGTTCGCCGTCGGTAAGAGTTTCCCAGTGG-CG 1746225 Query 869813 GTG-TCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871 | || | ||| || || || ||||||||||| | ||||| ||||| || ||||| Sbjct 1746224 TAGATCCGACGAGAGATCGACTTCTTCGGCGGTCCAAAAGGAGGCTTCGGCTTTCTTGTA 1746165 Query 869872 CATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTT 869925 ||| |||||||||||| |||| |||| ||||| | | ||| |||| ||||| Sbjct 1746164 CATTTCCCATACTTGCGGGTATTGGATCGGGAACATGCAAAACCGGTCCGGGTT 1746111 Score = 111 bits (122), Expect = 2e-18 Identities = 164/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 869219 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAG 869278 || ||||| | |||||||| || | |||||| || ||||||||||| || ||||| || Sbjct 1746643 CCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCGCGCAGAAACTTCCAGAGAAGAAA 1746584 Query 869279 ATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG 869338 || || || ||| ||||| |||| ||||| ||||| || || || || | Sbjct 1746583 ATCCCTTCCACGCAAGCAAAAGCGATTAGCCGTTCGGCGAAAGTTTCCGAACC------G 1746530 Query 869339 TTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCG 869398 | |||||| |||| ||||| || || || || ||| | ||||| || |||| |||| Sbjct 1746529 TCGATCCATTTCAATGCCCACTCAGCTTTCTTAGCCACACATGGCACTGTTTCGACGGCG 1746470 Query 869399 CGAAAGAGGTGGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAG 869451 | ||||| ||| ||||||| | |||||||| || || || | ||||| Sbjct 1746469 TGGAAGAGCCGGTTCTTTTCGTTGGAGTCCTTGATGTAAGTTTCAAGGAGGAG 1746417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106640739115458