Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq14 107 2e-18 seq10 98.7 8e-16 seq4 84.2 2e-11 >seq14 Length=6982396 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| |||||||| || | || ||||||||||| ||| | ||| || | Sbjct 1120472 ATGCAAATCTTTGTCAAGACCCTGACGGGCAAAACCATAACCTTGGAAGTTGAAAGCTCC 1120413 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | | || || ||||| ||||||||||| | ||| ||| || Sbjct 1120412 GACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAAGAAGGAATTCCCCCGGACCAG 1120353 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||||| ||||| | ||| || || || || ||||| | | |||| |||||||||||||| Sbjct 1120352 CAAAGGCTTATCTTTGCTGGGAAGCAACTCGAGGACGGCCGAACTTTGGCGGATTACAAC 1120293 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || ||||| || || || | ||| |||| ||| | || || || || Sbjct 1120292 ATCCAAAAGGAGTCAACCCTCCACCTGGTCTTACGTCTCCGTGGTGG 1120246 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGCCTGA 110331 |||||||| || ||||| || | || || |||||||| ||| | ||| || | || Sbjct 1120700 ATGCAAATCTTCGTCAAGACCCTGACGGGTAAAACCATAACCCTGGAAGTCGAAAGCTC- 1120642 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||| || | | | | || || ||||| ||||| ||||| | || ||| || Sbjct 1120641 CGACACCATTGACAACGTGAAGGCCAAGATCCAGGACAAGGAAGGAATCCCACCGGACCA 1120582 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||||| ||||| | ||| || || ||||| ||||| | |||||| | ||||||||||| Sbjct 1120581 GCAAAGGCTTATCTTTGCTGGGAAGCAGCTCGAGGACGGCAGAACCTTAGCGGATTACAA 1120522 Query 110452 CATTCAAAAAGAATCTAC 110469 ||| ||||| || || || Sbjct 1120521 CATCCAAAAGGAGTCAAC 1120504 >seq10 Length=8461613 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || ||||||||||| |||||||||||||| ||| ||||| ||| | | Sbjct 2239249 ATGCAAATCTTCGTCAAAACTTTGACCGGCAAAACCATCACCCTCGAAGTCGAGAGTTCC 2239190 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | | || || || || ||||| |||||| | || || ||| Sbjct 2239189 GACACGATTGACAACGTCAAGGCCAAAATCCAGGACAAGGAAGGCATCCCTCCCGACCAA 2239130 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | || || |||||||||||||| | | | || |||| ||||| ||| Sbjct 2239129 CAGCGGCTCATCTTCGCCGGGAAACAGCTGGAGGACGGCCGTACTTTGGCTGATTATAAC 2239070 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || ||||| || || || | ||| | || | || || || ||||| Sbjct 2239069 ATCCAAAAGGAGTCAACTCTCCACCTTGTCCTCAGGCTTCGTGGGGG 2239023 >seq4 Length=12062019 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAG-CC 110328 || ||||| || || || ||||| ||||||||||||||||| ||| |||| |||| | Sbjct 4154218 AAGATGCAGATCTTCGTGAAAACCTTAACCGGCAAAACCATCACCCTCGAGGTGGAGAGC 4154277 Query 110329 TGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGA 110388 | | || || ||| | | || || ||||| ||||| |||||| | || || Sbjct 4154278 TCA-GACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGA 4154336 Query 110389 TCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTA 110448 |||||| | | || | || || || || || || || | | |||| | |||||||| Sbjct 4154337 TCAACAGCGCTTGATCTTCGCCGGCAAGCAACTTGAAGACGGCCGAACCCTTGCGGATTA 4154396 Query 110449 CAACATTCAAAAAGAATCTACGTTGCACATGGT 110481 ||| || ||||| ||||| || | ||| |||| Sbjct 4154397 CAATATCCAAAAGGAATCGACTCTCCACCTGGT 4154429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412811038626482