Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq26 167 4e-35 >seq26 Length=2022356 Score = 167 bits (184), Expect = 4e-35 Identities = 207/284 (73%), Gaps = 6/284 (2%) Strand=Plus/Minus Query 794380 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAG 794439 || ||||| | |||||||| || | |||||| || || |||||||| || ||||| || Sbjct 1746643 CCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCGCGCAGAAACTTCCAGAGAAGAAA 1746584 Query 794440 ATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTG 794499 || || || ||| ||||| ||| ||||| ||||| ||||| ||| || || Sbjct 1746583 ATCCCTTCCACGCAAGCAAAAGCGATTAGCCGTTCGGCGAAAGTTTCCGAACCGTC---- 1746528 Query 794500 TTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCG 794559 |||||| |||| |||||||| || || || ||| | ||||| || |||| |||| Sbjct 1746527 --GATCCATTTCAATGCCCACTCAGCTTTCTTAGCCACACATGGCACTGTTTCGACGGCG 1746470 Query 794560 CGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAG 794619 | ||||| ||| ||| ||| | |||||||| ||| || || | |||||| || Sbjct 1746469 TGGAAGAGCCGGTTCTTTTCGTTGGAGTCCTTGATGTAAGTTTCAAGGAGGAGACTATAC 1746410 Query 794620 GTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAA 794663 |||| |||||||| |||||||||||||| ||||||||||| || Sbjct 1746409 ATCTCGGAGTGGATATTTTCGATGGCGATTTGGAAGCCATAGAA 1746366 Score = 158 bits (174), Expect = 2e-32 Identities = 197/268 (74%), Gaps = 4/268 (1%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||||| | |||||| ||||||||||| ||| |||| || || || ||||| || Sbjct 1746358 GCCTCGGAGATTTGGACTTCCTTCATGAACCGGACGGCGAGATTTTCGAGGACGATACCA 1746299 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 ||| ||| || || |||||||||||||| |||| ||||| || ||| ||||| | || Sbjct 1746298 TCGGAGGCTGCAAAGAAGGCGAGGACGTGAGTGATGAAGTGGCGTTCGCCGTCGGTAAGA 1746239 Query 796270 GAGACCCAGTGGACCGT--GTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGG 796327 | |||||||| ||| || | ||| ||||| || ||||||||||||||||||| Sbjct 1746238 GTTTCCCAGTGG--CGTAGATCCGACGAGAGATCGACTTCTTCGGCGGTCCAAAAGGAGG 1746181 Query 796328 CCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGC 796387 | ||||| || |||||||| ||||||| | |||| |||| ||||||| ||| | Sbjct 1746180 CTTCGGCTTTCTTGTACATTTCCCATACTTGCGGGTATTGGATCGGGAACATGCAAAACC 1746121 Query 796388 GATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 | | |||||| | ||||| ||||| Sbjct 1746120 GGTCCGGGTTCGAGGCGAGCAGTGGCTC 1746093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915600280916486