Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq14 107 2e-18 seq9 93.3 3e-14 seq10 89.7 4e-13 >seq14 Length=6982396 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| |||||||| || | || ||||||||||| ||| | ||| || ||| Sbjct 1120472 ATGCAAATCTTTGTCAAGACCCTGACGGGCAAAACCATAACCTTGGAAGTTGAAAGCTC- 1120414 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | | || || ||||| || |||||||| | ||| ||| || Sbjct 1120413 CGACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAAGAAGGAATTCCCCCGGACCA 1120354 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| || ||||| | ||| || || || || ||||||| | ||| ||||||| ||||| Sbjct 1120353 GCAAAGGCTTATCTTTGCTGGGAAGCAACTCGAGGACGGCCGAACTTTGGCGGATTACAA 1120294 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTT 107767 ||| ||||||||||| || | ||| |||| || Sbjct 1120293 CATCCAAAAGGAGTCAACCCTCCACCTGGTCTT 1120261 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAA-CGGAGGCTGG 107614 |||||||| || ||||| || | || || |||||||| ||| | ||| || | ||| Sbjct 1120700 ATGCAAATCTTCGTCAAGACCCTGACGGGTAAAACCATAACCCTGGAAGTCGAAAGCTC- 1120642 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || | | | | || || ||||| || || ||||| | || ||| || Sbjct 1120641 CGACACCATTGACAACGTGAAGGCCAAGATCCAGGACAAGGAAGGAATCCCACCGGACCA 1120582 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| || ||||| | ||| || || ||||| ||||||| || ||| | ||||| ||||| Sbjct 1120581 GCAAAGGCTTATCTTTGCTGGGAAGCAGCTCGAGGACGGCAGAACCTTAGCGGATTACAA 1120522 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| ||||||||||| || Sbjct 1120521 CATCCAAAAGGAGTCAAC 1120504 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| ||||| ||||| ||| | ||||| ||||||||||| | || |||| ||| | Sbjct 1120016 ATGCAGATTTTCGTCAAGACTCTGACAGGGAAAACCATTACTTTGGAGGTGGAGAGCTCG 1119957 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | || || ||||||| || || ||||| | || ||||| Sbjct 1119956 -GATACGATTGATAATGTTAAGGCAAAGATTCAGGACAAGGAAGGGATTCCACCAGATCA 1119898 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| || | |||| ||| || || || |||| || | | || |||| || ||||| Sbjct 1119897 GCAAAGGTTGATTTTTGCTGGGAAGCAATTGGAAGATGGAAGGACTTTGGCTGATTACAA 1119838 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 ||||| |||||||| || | ||| |||| ||| Sbjct 1119837 TATTCAGAAGGAGTCCACCCTTCACCTGGTCTTG 1119804 >seq9 Length=8984705 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||||||||| || | || || || || |||||| | ||| ||| | Sbjct 7052852 ATGCAAATTTTTGTCAAGACCCTCACTGGAAAGACTATTACCTTGGAAGTTGAGAGTTCT 7052911 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | | |||||| ||||| || || ||||| | || ||||| Sbjct 7052912 GATACCATTGACAATGTAAAAGCTAAGATCCAGGACAAGGAAGGTATCCCTCCAGATCAA 7052971 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | ||| || |||||| ||||||| | | ||| | || || ||||| Sbjct 7052972 CAGAGGCTGATATTTGCTGGCAAACAGTTGGAGGATGGGAGGACACTTGCAGATTACAAT 7053031 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 || ||||| ||||| || | ||| ||||| || | |||| || |||| Sbjct 7053032 ATCCAAAAAGAGTCAACCCTCCACTTGGTGCTGCGTCTGCGTGGAGGAA 7053080 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 107670 GATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGAC 107729 || |||||||| ||||||| ||| ||||| ||||| |||| | || || | || || Sbjct 7042353 GACCAGCAGAGGCTTATTTTTGCTGGTAAGCAGCTTAAGGATGGGAAGACCCTTGCAGAT 7042412 Query 107730 TACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 |||||||||||||||||||| || | ||| |||||||| Sbjct 7042413 TACAACATTCAAAAGGAGTCAACCCTCCACTTGGTGTTG 7042451 >seq10 Length=8461613 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| || ||||||||||| || ||||||||||| ||| ||||| ||| | | Sbjct 2239249 ATGCAAATCTTCGTCAAAACTTTGACCGGCAAAACCATCACCCTCGAAGTCGAGAGTTCC 2239190 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | | || || || || || || |||||| | || || || Sbjct 2239189 GACACGATTGACAACGTCAAGGCCAAAATCCAGGACAAGGAAGGCATCCCTCCCGACCAA 2239130 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || || |||||||||||||||| | || |||| || || ||| Sbjct 2239129 CAGCGGCTCATCTTCGCCGGGAAACAGCTGGAGGACGGCCGTACTTTGGCTGATTATAAC 2239070 Query 107736 ATTCAAAAGGAGTCTAC 107752 || ||||||||||| || Sbjct 2239069 ATCCAAAAGGAGTCAAC 2239053 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| ||||||||||| || || || || ||||| || ||| | || ||| | Sbjct 2238794 AATGCAGATTTTTGTCAAGACCTTGACTGGAAAAACAATCACCTTGGAGGTGGAAAGTTC 2238735 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| ||| | || || ||||||| ||||| ||||| | ||| ||||| Sbjct 2238734 GGATACAATCGATAACGTCAAGGCAAAGATTCAGGATAAGGAAGGAATCCCCCCAGATCA 2238675 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| || ||||| | ||| || ||||| ||||||| | | || | || || || || Sbjct 2238674 GCAAAGGCTTATCTTTGCCGGGAAACAATTGGAGGATGGGAGGACTTTAGCTGATTATAA 2238615 Query 107735 CATTCAAAAGGAGTCTAC 107752 |||||| || |||||||| Sbjct 2238614 CATTCAGAAAGAGTCTAC 2238597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398847272396986