Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq4 89.7 6e-13 seq8 84.2 2e-11 >seq4 Length=12062019 Score = 89.7 bits (98), Expect = 6e-13 Identities = 139/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 158213 GAGGATCAATACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAACTACTCTTGT 158272 || ||| ||||||| |||| || || || || ||||||||||| | ||| ||||| Sbjct 8093541 GATGATAAATACATCTTAGATGCTGCTGAGGAGGCAGGAGTTGACCTGCCCTATTCTTGC 8093482 Query 158273 CGTGCTGGTGCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAGT 158332 | ||||| |||||||| ||||||| || || || | || || | || ||||| | Sbjct 8093481 AGGGCTGGAGCTTGCTCCACATGTGCTGGGAAGATAATTTCAGGTTCAGTGGATCAATCT 8093422 Query 158333 GATCAGTCGTTCCTAGACGATGATCAAATCGCAGCAGGATTTGTTCTTACGTGTGTAGCA 158392 || || ||||| || ||| | ||||| | | |||| ||| || || ||||| || Sbjct 8093421 GACGGTTCCTTCCTTGATGATAAACAAATGGAGGAGGGATATGTGCTGACTTGTGTTTCA 8093362 Query 158393 TATCCAACATCTGATTGTG 158411 || || || || || |||| Sbjct 8093361 TACCCGACCTCAGACTGTG 8093343 >seq8 Length=9139585 Score = 84.2 bits (92), Expect = 2e-11 Identities = 134/190 (71%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 158212 AGAGGATCAATACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAACTACTCTTG 158271 ||| ||| ||||||||| ||| ||| || |||| || |||||||| ||||| || Sbjct 6051970 AGACGATGTATACATTCTTGACCAAGCCGAGGAAGAGGGTATTGATATTCCATACTCATG 6051911 Query 158272 TCGTGCTGGTGCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAG 158331 | |||||| ||||||||||||| | || || || | || |||| |||||| Sbjct 6051910 CAGGGCTGGTTCTTGCTCTTCATGCACTGGAAAGGTTACAAAAGGTTCTGTGGATCAGTC 6051851 Query 158332 TGATCAGTCG-TTCCTAGACGATGATCAAATCGCAGCAGGATTTGTTCTTACGTGTGTAG 158390 ||| | || | ||||| || ||||| || || | | || |||||||| || ||||| | Sbjct 6051850 TGA-CGGTAGCTTCCTCGATGATGAGCAGATGGATTCTGGTTTTGTTCTCACTTGTGTCG 6051792 Query 158391 CATATCCAAC 158400 | || || || Sbjct 6051791 CTTACCCCAC 6051782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545232200101920