Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq10 89.7 5e-13 seq4 89.7 5e-13 seq5 84.2 2e-11 >seq10 Length=8461613 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| || | | |||||| | ||||| || ||||| ||||||||||||||||| | Sbjct 2238795 CCTCCACGAAGCCTCAAAACAAGATGAAGGGTTGATTCCTTTTGTATGTTGTAATCAGCC 2238854 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || ||| ||| || || || || || || |||||| |||||| || || || || Sbjct 2238855 AAGGTCCTCCCGTCCTCAAGCTGCTTCCCGGCGAAGATCAAACGTTGTTGGTCTGGTGGG 2238914 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| || || || || || | | || | |||||| | | || || Sbjct 2238915 ATCCCTTCCTTATCTTGGATCTTGGCCTTAACGTTATCAATCGTGTCCGAGCTCTCGACC 2238974 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | ||||| || ||||| ||||| || || |||||||| Sbjct 2238975 TCCAAGGTTATTGTCTTTCCTGTCAAGGTTTTGACAAAGATTTGCAT 2239021 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || || || ||||| ||||| ||||| || || | ||| || || ||||| || Sbjct 2239053 GTTGACTCCTTTTGGATGTTATAATCAGCCAAAGTACGGCCGTCCTCCAGCTGTTTCCCG 2239112 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 || |||| || || || || |||||||| |||||||| ||||| ||||| || Sbjct 2239113 GCGAAGATGAGCCGCTGTTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATTTTGGCCTTG 2239172 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | |||||| | || ||||| | || | || ||||||||||| ||| Sbjct 2239173 ACGTTGTCAATCGTGTCGGAACTCTCGACTTCGAGGGTGATGGTTTTGCCGGTCAAAGTT 2239232 Query 137395 TTTACGAATATTTGCATA 137412 || ||||| ||||||||| Sbjct 2239233 TTGACGAAGATTTGCATA 2239250 >seq4 Length=12062019 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 137209 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 137268 |||| || ||||| || || || ||||| ||| || |||| ||| ||||| || Sbjct 4154651 TGAAGGGTTGATTCCTTCTGGATATTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGC 4154592 Query 137269 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 137328 || ||||| |||||| || || || || ||||| ||||| || ||||| || || Sbjct 4154591 TTGCCAGCGAAGATCAATCGCTGTTGGTCCGGAGGGATGCCCTCCTTGTCTTGGATCTTG 4154532 Query 137329 TGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 137388 || | | || | |||||| | | ||| ||||||| ||| | ||||||||||| Sbjct 4154531 GCCTTAACGTTGTCGATCGTGTCAGAGCTTTCGACTTCAAGAGTGATGGTCTTGCCGGTT 4154472 Query 137389 AATGTTTTTACGAATATTTGCATA 137412 | ||||| ||||| || |||||| Sbjct 4154471 AGGGTTTTGACGAAGATCTGCATA 4154448 >seq5 Length=11097736 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 137196 ACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGA 137255 ||| | ||| | |||| ||| ||||| || || |||||||| ||| | |||| Sbjct 4357021 ACGGAGAACGAGGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCGGCTAAGGTGCGGCC 4356962 Query 137256 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 137315 ||||||||| || || || || |||| ||||||||||| || || || || ||||| || Sbjct 4356961 GTCTTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCCGGCGGGATTCCTTCCTT 4356902 Query 137316 GTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCAC 137375 ||| || || ||| | | || | ||||| | || ||| || || | || | Sbjct 4356901 GTCTTGGATCTTGGCTTTGACATTGTCGATGGTGTCAGAGGATTCGACCTCGAGGGTTAT 4356842 Query 137376 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||||| || || | ||||| ||||| || ||||| Sbjct 4356841 GGTCTTCCCCGTTAGGGTTTTGACGAAGATCTGCAT 4356806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488506907296800