Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq15 120 7e-22 seq26 87.8 4e-12 >seq15 Length=6219335 Score = 120 bits (132), Expect = 7e-22 Identities = 205/294 (70%), Gaps = 4/294 (1%) Strand=Plus/Plus Query 279806 GAATTTATTGATAAAGAACTGATCCATTTTTCTAATTATGATGTTCATCGTTCTATTCCT 279865 ||||| ||| |||| || || || | ||||| | |||| |||| | || |||||| Sbjct 1652622 GAATTCATTAATAAGGAGCTTATTCTGTTTTCCATGGCTGATCTTCAAAGGTCAATTCCT 1652681 Query 279866 CATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTGTTTCAAAAGA 279925 | || ||||| |||| ||| || | ||||| | || ||| |||||| || Sbjct 1652682 TCAATGATTGATGGCCTGAAGCCTGGTCAAAGGAAGATCCTTTTTTGTTCTTTCAAGAGG 1652741 Query 279926 AAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATGCAGGT 279985 || || ||||||||| |||||||| || |||||||||||||||| ||| | | | Sbjct 1652742 AATTTTGTAAAGGAAGCAAAGGTTGCTCAATTTTCAGGTTATGTTTCAGAGCATTCTGCT 1652801 Query 279986 TATCATCACGGTGA--AGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCCCAAGATTTTA 280043 || ||||| ||||| || |||| | | | || | ||||| || | || ||||||||| Sbjct 1652802 TACCATCATGGTGAGCAGAGTCT-TGCTA-GTACAATTGTTGGAATGGCACAAGATTTTG 1652859 Query 280044 TGGCTTCAAACAACTTAAATCTGCTTTCACCAAATGGTCAATTTGGTTCTCGTA 280097 ||| |||||| |||| || || ||| |||||||||||| |||||| Sbjct 1652860 TGGGCAGTAACAACATAAACCTTCTCCATCCAGGTGGTCAATTTGGCACTCGTA 1652913 >seq26 Length=2022356 Score = 87.8 bits (96), Expect = 4e-12 Identities = 132/187 (71%), Gaps = 3/187 (2%) Strand=Plus/Plus Query 131801 AAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAATTTTTCTACAAGA 131860 |||||||| || ||||| | |||||||| || | ||| | | ||| | | | Sbjct 1746498 AAGAAAGCTGAGTGGGCATTGAAATGGATC---GACGGTTCGGAAACTTTCGCCGAACGG 1746554 Query 131861 CTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTT 131920 || | ||||||||||| || ||||| || ||||| || || |||||| || || ||| Sbjct 1746555 CTAATCGCTTTTGCTTGCGTGGAAGGGATTTTCTTCTCTGGAAGTTTCTGCGCGATATTT 1746614 Query 131921 TGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGA 131980 ||| | || ||||| || || ||||||||| | | || || || | || ||||| || Sbjct 1746615 TGGTTAAAAAAGCGCGGGTTAATGCCTGGATTAACTTTCTCAAACGAGTTAATCTCACGA 1746674 Query 131981 GATGAAG 131987 ||||||| Sbjct 1746675 GATGAAG 1746681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186720438519114