Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq2 100 2e-16 seq9 82.4 5e-11 >seq2 Length=14367614 Score = 100 bits (110), Expect = 2e-16 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | ||||| || || || ||| ||||| ||||| ||||| | Sbjct 9074731 CCACCACGAAGACGGAGAACCAAGTGAAGGGTTGACTCCTTTTGAATGTTATAATCAGCA 9074672 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| | | | || || | ||||||||| ||||||||||| | |||||| ||| | || Sbjct 9074671 AGTGTCCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAACCTCTGCTGGTCTGGTGGG 9074612 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTC 33698 | ||| ||||| || ||| || | | |||| ||| | ||||| ||| || Sbjct 9074611 ATACCCTCTTTATCCTGAATCTT-GGCCTTGACATTGTCAATAGTGTCTGAGCT---CTC 9074556 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | ||||||||||||||||| | || || |||||||| ||||| Sbjct 9074555 TACCTCCAAAGTGATCGTTTTACCTGTGAGAGTCTTGACAAAGATTTGCAT 9074505 >seq9 Length=8984705 Score = 82.4 bits (90), Expect = 5e-11 Identities = 152/219 (69%), Gaps = 8/219 (4%) Strand=Plus/Minus Query 33535 CGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCG 33594 || || |||||||| || || ||| || || ||||| || || | || || | | Sbjct 7052838 CGCAAAACCAAATGGAGGGTTGACTCCTTCTGAATGTTATAGTCTGCAAGGGTTCTGCCA 7052779 Query 33595 TCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTG 33654 || || | ||||||||||||||||| || | |||||| ||| | || | ||| || ||| Sbjct 7052778 TCTTCAAGCTGTTTTCCGGCAAAAATTAACCTCTGCTGGTCTGGTGGGATACCCTCCTTG 7052719 Query 33655 TCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGA---TTCCACGTCAACCGT 33710 || ||| ||| ||| |||| || | ||| || ||| ||||| || | || Sbjct 7052718 TCCTGAATCTTCGCCTTC-ACATTATCGATGGTATC---TGAACTCTCCACCTCTAAAGT 7052663 Query 33711 GATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| ||||| || || | ||||| ||||| |||||||| Sbjct 7052662 GATGGTTTTCCCAGTGAGAGTTTTCACAAATATCTGCAT 7052624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328679667070080