Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq26 307 2e-77 >seq26 Length=2022356 Score = 307 bits (340), Expect = 2e-77 Identities = 409/561 (73%), Gaps = 14/561 (2%) Strand=Plus/Plus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 ||||| ||||| | |||||| |||| ||| | ||||||| |||| |||| || Sbjct 1746093 GAGCCACTGCTCGCCTCGAACCCGGACCGGTTTTGCATGTTCCCGATCCAATACCCGCAA 1746152 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835 |||||||||||||| | |||| |||| |||||||||||||||||||| || ||||| || Sbjct 1746153 GTATGGGAAATGTACAAGAAAG-CCGAAGCCTCCTTTTGGACCGCCGAAGAAGTCGATCT 1746211 Query 1455836 CGGCGCCGAC--ACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAG 1455893 | | || ||| |||||||| | || | ||||| ||| ||||| ||||||| Sbjct 1746212 CTCGTCGGATCTACG--CCACTGGGAAACTCTTACCGACGGCGAACGCCACTTCATCACT 1746269 Query 1455894 CACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCG 1455953 |||||||||||||| ||| || ||| |||||| ||||| ||| || || |||| ||| Sbjct 1746270 CACGTCCTCGCCTTCTTT-GCAGCCTCCGATGGTATCGTCCTCGAAAATCTCGCCGTCCG 1746328 Query 1455954 CTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCAT 1456013 || ||||| || |||||| | | ||||| ||| ||| || || ||||| |||||||| Sbjct 1746329 GTTCATGAAGGAAGTCCAAATCTCCGAGGCTCGTGCGTTCTATGGCTTCCAAATCGCCAT 1746388 Query 1456014 CGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGT 1456073 |||||| |||||||| || | || ||||| | || || ||| |||||||| | Sbjct 1746389 CGAAAATATCCACTCCGAGATGTATAGTCTCCTCCTTGAAACTTACATCAAGGACTCCAA 1746448 Query 1456074 CGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGA 1456133 ||| ||| ||| ||||| | |||| |||| || ||||| | ||| || || || || Sbjct 1746449 CGAAAAGAACCGGCTCTTCCACGCCGTCGAAACAGTGCCATGTGTGGCTAAGAAAGCTGA 1746508 Query 1456134 CTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTT-GCCGAGCGGCTCGTCGG 1456192 ||||| |||| |||||| || || || ||||| ||||| ||||| ||| Sbjct 1746509 GTGGGCATTGAAATGGATC------GACGGTTCGGAAACTTTCGCCGAACGGCTAATCGC 1746562 Query 1456193 CTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAA 1456251 ||||| |||| || || || || ||||| || ||||||||||| || |||||| | || Sbjct 1746563 TTTTGCTTGCGTGGAAGGGATTTTCTTCTCTGGAAGTTTCTGCGCGATATTTTGGTTAAA 1746622 Query 1456252 GAAGCGCGGCCTCATGCCCGG 1456272 |||||||| | ||||| || Sbjct 1746623 AAAGCGCGGGTTAATGCCTGG 1746643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177225351535988