Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq26 154 2e-32 seq2 134 2e-26 >seq26 Length=2022356 Score = 154 bits (170), Expect = 2e-32 Identities = 425/647 (66%), Gaps = 6/647 (1%) Strand=Plus/Minus Query 39311 GACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCT 39370 ||||| || || ||| ||||| || ||||| | ||||||||| ||||| ||||||||| Sbjct 1747009 GACATGACCGCCGCTTTCTGGTACTCTCCAACTCTTTTCTCGAAGAAATTGGTTTTGCCT 1746950 Query 39371 TCCAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAAT 39430 | ||| || || |||||| ||||||| || |||| |||| || | | | Sbjct 1746949 TGCAACGAAATCAGTTCCATCCAATCAAAAGGGTTAGCCACATTGTAAATCCTCCCGTAC 1746890 Query 39431 CCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAA 39490 ||||| | | ||| | |||||| || || || ||||| |||||| || | Sbjct 1746889 CCTAACGCCCCCAACAACCGATCTGCGACGAACTCGATGTACTGACTCATCAGCTCTCCG 1746830 Query 39491 TTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACG 39550 ||||| || | | | || ||||| || || |||||| | || || || || Sbjct 1746829 TTCATCCCAACCAATGCGCACGGCAGAGCATCACATACAAACTCCCTCTCTATATCCACT 1746770 Query 39551 GCCTCTGTTATTATCGATGTTACTACCTCATCACTCGG--TGGATGCAATAAATGTTTAA 39608 || || | | |||| | | || ||| || ||| | | || | | | || Sbjct 1746769 GCGTCCCTCACTATCCCTCTCACGCTCTCTTCGCTCAGCTTTGACCGGAGGAGGGAGTA- 1746711 Query 39609 ACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAA 39668 || ||||| ||||| || ||||| || || ||||||| ||||| ||||| || | Sbjct 1746710 -CAGCAAGCAAGCGAAATCGCAATGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGA 1746652 Query 39669 ATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCA 39727 | || | ||||||||||| || |||||||| | ||||||||| || ||| ||| |||| Sbjct 1746651 AAGTTAATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCGC-GCAGAAACTTCCA 1746593 Query 39728 GAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCA 39787 || ||||| || ||||| || ||||| || | || | || || || || | Sbjct 1746592 GAGAAGAAAATCCCTTCCACGCAAGCAAAAGCGATTAGCCGTTCGGCGAAAGTTTCCGAA 1746533 Query 39788 TTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATA 39847 | ||||| ||| |||||| ||||||||||| ||||| |||| |||||| | Sbjct 1746532 CCGTCGATCCATTTCAATGCCCACTCAGCTTTCTTAGCCACACATGGCACTGTTTCGACG 1746473 Query 39848 GCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTA 39907 || | ||||| | ||||| | || || | || || || | | |||||| Sbjct 1746472 GCGTGGAAGAGCCGGTTCTTTTCGTTGGAGTCCTTGATGTAAGTTTCAAGGAGGAGACTA 1746413 Query 39908 TACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAA 39954 ||||| || || ||||| ||||| || || || || || || || || Sbjct 1746412 TACATCTCGGAGTGGATATTTTCGATGGCGATTTGGAAGCCATAGAA 1746366 >seq2 Length=14367614 Score = 134 bits (148), Expect = 2e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| ||||| | || | ||||||| ||| | |||| |||||| || | ||| || Sbjct 5550398 TCCTCCTTGATCAACATAACGAGCAGTGTCATTGAACACTCGCAGCATTGGGACAATGCC 5550457 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||||||| |||||||||||||| ||||||||||||| | || ||||| || || ||| Sbjct 5550458 ATTAGATGTACCATTTGTTCCACGAATATAACTTCCTGTGGCTCGAATGTTGTGAACAGA 5550517 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| || ||||| || ||| || | |||||| ||||| || |||||||| Sbjct 5550518 GACACCAATCCCTCCAGCTGATTTGCTAATAACAGCACACTCCTTCAAAGTATCATATAT 5550577 Query 69930 ACCCTCTATGCTATCATCTATCAT 69953 || || || ||||||||| |||| Sbjct 5550578 TCCTTCAATACTATCATCTTTCAT 5550601 Score = 95.1 bits (104), Expect = 2e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 ||||| ||||| || | ||| ||||| || |||||||||||| ||| ||| | || | Sbjct 5550742 GTTCCAGCATTGAAAAGTGTCGGAGAAGCATGAGTGAACCATCTTTGAGACATCATGTGA 5550801 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 || |||| ||||| || || || || || ||||||||| | || || | ||| ||| Sbjct 5550802 TAAGTTTTTATAGCAGAATCAATGTCATCCTTATGAATTCCAACAGCAACCCTCATTAAC 5550861 Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170 || || ||||| | ||||| || | | |||||| ||||| || | || || Sbjct 5550862 ATGTGTTGAGGCCTTTCTATAACCTTCCCTTGAACTTTCAAGAGGTAGGACCTCTCGAGG 5550921 Query 70171 GTTTTAAACCCAAAATA 70187 |||||||| ||||| || Sbjct 5550922 GTTTTAAAGCCAAAGTA 5550938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686856646449360