Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq26 168 5e-37 >seq26 Length=2022356 Score = 168 bits (186), Expect = 5e-37 Identities = 399/595 (67%), Gaps = 16/595 (3%) Strand=Plus/Plus Query 43698 GGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGG 43757 ||||| | |||| || || ||||| | | ||||| |||||||||| ||||| | | Sbjct 1746121 GGTTTTGCATGTTCCCGATCCAATACCCGCAAGTATGGGAAATGTACAAGAAAGCCGAAG 1746180 Query 43758 CGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCAT 43817 | || |||||||| || |||||||| ||| | | || || || ||| | Sbjct 1746181 CCTCCTTTTGGACCGCCGAAGAAGTCGATCTCTCGTCGGATCTACGCCACTGGGAAACTC 1746240 Query 43818 TAAAACCACAA-GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGAC 43876 | | | || ||| || || || || || | || || ||||| || ||| Sbjct 1746241 TTAC-CGACGGCGAACGCCACTTCATCACTCACGTCCTCGCCTTCTTTGCAGCCTCCGAT 1746299 Query 43877 GGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCA 43936 || || ||| |||||| | | ||||| | | ||||| ||| | | || || Sbjct 1746300 GGTATCGTCCTCGAAAATCTCGCCGTCCGGTTCATGAAGGAAGTCCAAATCTCCGAGGCT 1746359 Query 43937 CGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTT 43996 || || ||||| || ||||| ||||| |||||||| || || || ||||| ||||| Sbjct 1746360 CGTGCGTTCTATGGCTTCCAAATCGCCATCGAAAATATCCACTCCGAGATGTATAGTCTC 1746419 Query 43997 CTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAA 44056 || | || || |||||||| || |||| ||| | || | || | || | ||| Sbjct 1746420 CTCCTTGAAACTTACATCAAGGACTCCAACGAAAAGAACCGGCTCTTCCACGCCGTCGAA 1746479 Query 44057 ACAGTACC---TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAA---TTCA 44110 ||||| || || | ||| ||||| || ||||| | |||||||| | ||| Sbjct 1746480 ACAGTGCCATGTGTGGCTAAG---AAAGCTGAGTGGGCATTGAAATGGATCGACGGTTCG 1746536 Query 44111 AATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCA 44170 || |||| | ||||| || |||| ||||| |||||||| |||||||| || Sbjct 1746537 ---GAAACTTTCGCCGAACGGCTAATCGCTTTTGCTTGCGTGGAAGGGATTTTCTTCTCT 1746593 Query 44171 GGATCGTT-TGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTT 44229 ||| || |||| | |||||||||||||| || || || || |||||||| || || || Sbjct 1746594 GGAAGTTTCTGCG-CGATATTTTGGTTAAAAAAGCGCGGGTTAATGCCTGGATTAACTTT 1746652 Query 44230 TTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 ||||| |||||||| || |||||||| | ||||||||||| ||||||||| Sbjct 1746653 CTCAAACGAGTTAATCTCACGAGATGAAGGTCTCCATTGCGATTTCGCTTGCTTG 1746707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397426577574370