Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq4 113 4e-20 seq5 107 2e-18 seq14 102 7e-17 seq9 91.5 1e-13 seq10 86.0 5e-12 >seq4 Length=12062019 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||||||||||| || | || | || | || || || || || |||||||||||| Sbjct 4154677 TGCCTCCGCGCAGCCTGAGCACAAGGTGAAGGGTTGATTCCTTCTGGATATTGTAGTCGG 4154618 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | |||| |||| |||||||| || || ||| | || | |||||||| ||||| | Sbjct 4154617 CCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGTTGGTCCGGAG 4154558 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || ||||||| || | | | || | ||||| | | ||| | Sbjct 4154557 GGATGCCCTCCTTGTCTTGGATCTTGGCCTTAACGTTGTCGATCGTGTCAGAGCTTTCGA 4154498 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 |||| ||||| || | ||||| || || ||||| || ||||| |||||| Sbjct 4154497 CTTCAAGAGTGATGGTCTTGCCGGTTAGGGTTTTGACGAAGATCTGCATA 4154448 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTC 27097 ||||| || | || || || ||||| |||||||| || | | | || ||||||| Sbjct 4154430 TACCAGGTGGAGAGTCGATTCCTTTTGGATATTGTAATCCGCAAGGGTTCGGCCGTCTTC 4154371 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 || || || |||||| | || | ||||||||||| || || | || || || || Sbjct 4154370 AAGTTGCTTGCCGGCGAAGATCAAGCGCTGTTGATCAGGAGGAATGCCTTCCTTGTCTTG 4154311 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||||||| || | | | || | ||||||| | || || || || || || | ||| Sbjct 4154310 GATCTTGGCCTTGACGTTGTCGATGGTGTCTGAGCTCTCCACCTCGAGGGTGATGGTTTT 4154251 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| || | |||||||| ||||| ||||| Sbjct 4154250 GCCGGTTAAGGTTTTCACGAAGATCTGCAT 4154221 >seq5 Length=11097736 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| | | |||| ||||||||||||| || ||| Sbjct 4357002 GTGGATTCCTTCTGGATGTTGTAGTCGGCTAAGGTGCGGCCGTCTTCGAGCTGCTTGCCG 4356943 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | |||||||| || || |||||||| | || || || || ||||||| ||| Sbjct 4356942 GCGAAGATGAGACGTTGCTGGTCCGGCGGGATTCCTTCCTTGTCTTGGATCTTGGCTTTG 4356883 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | || ||| || || || ||||| | || ||||| || ||| Sbjct 4356882 ACATTGTCGATGGTGTCAGAGGATTCGACCTCGAGGGTTATGGTCTTCCCCGTTAGGGTT 4356823 Query 27231 TTCACAAAGATTTGCAT 27247 || || ||||| ||||| Sbjct 4356822 TTGACGAAGATCTGCAT 4356806 >seq14 Length=6982396 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079 || || || | || ||| |||||||| | || || ||||| ||||| || || || || Sbjct 1120018 CCACCACGAAGCCTCAAAACCAAATGAAGGGTCGACTCTTTCTGAATGTTATAATCAGCC 1120077 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | ||| || |||| |||||||| || || || | || || | || ||||| ||||| Sbjct 1120078 AAAGTT-CGACCGTCCTCGAGCTGCTTCCCTGCAAAGATAAGCCTTTGCTGATCTGGCGG 1120136 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | || || || || ||||||| |||| | | || | ||||| | |||||| Sbjct 1120137 AATTCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCGGAACTTTCAAC 1120196 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| | ||||| | ||| |||||||| || || |||||||||||||| Sbjct 1120197 TTCCAAGGTTATGGTTTTACCCGTCAGGGTCTTGACAAAGATTTGCAT 1120244 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTC 27091 || || |||| || | || || || ||||| || ||||| || || | ||| || | Sbjct 1120258 CGTAAGACCAGGTGGAGGGTTGACTCCTTTTGGATGTTGTAATCCGCCAAAGTTCGGC-C 1120316 Query 27092 GTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTT 27151 ||| ||||| || || || || | || || | || || ||||| || | || ||||| Sbjct 1120317 GTCCTCGAGTTGCTTCCCAGCAAAGATAAGCCTTTGCTGGTCCGGGGGAATTCCTTCTTT 1120376 Query 27152 ATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTAT 27211 || ||||||| |||| | | || | ||||| | | ||||||||| | ||||| Sbjct 1120377 GTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGCTTTCAACTTCCAAGGTTAT 1120436 Query 27212 AGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | |||||||||||| || || |||||||||||||| Sbjct 1120437 GGTTTTGCCCGTCAGGGTCTTGACAAAGATTTGCAT 1120472 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || ||||| || ||||| || ||| | ||| || |||| |||||||| || || Sbjct 1120504 GTTGACTCCTTTTGGATGTTGTAATCCGCTAAGGTTCTGC-CGTCCTCGAGCTGCTTCCC 1120562 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 || | || || | || || ||||| || | || || || || ||||||| || Sbjct 1120563 AGCAAAGATAAGCCTTTGCTGGTCCGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCCTT 1120622 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 || | | || | ||||| | | ||| ||||| || ||||| | ||| |||||||| || Sbjct 1120623 CACGTTGTCAATGGTGTCGGAGCTTTCGACTTCCAGGGTTATGGTTTTACCCGTCAGGGT 1120682 Query 27230 TTTCACAAAGATTTGCAT 27247 || || ||||||||||| Sbjct 1120683 CTTGACGAAGATTTGCAT 1120700 >seq9 Length=8984705 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/216 (71%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGT-TGCGCTC 27091 ||||| |||||||| | || || |||||| || | || ||||| || || | | | | Sbjct 7046401 CGCAAAACCAAATGCAGGGTTGA-TCTTTTGGA-TGTTATAGTCTG-CAAGTGTCCTCCC 7046345 Query 27092 GTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTT 27151 ||||||||||| || || ||| |||| | | |||||| || || || | |||||| || Sbjct 7046344 ATCTTCGAGCTGCTTTCCAGCGAAAATCAACCTCTGTTGGTCAGGTGGGATACCCTCCTT 7046285 Query 27152 ATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTAT 27211 ||| ||||||| ||| | | | || | ||||| | | || || || | ||| || Sbjct 7046284 ATCTTGGATCTTGGCTTTGACGTTGTCAATTGTGTCAGAGCTCTCCACCTCCAAAGTGAT 7046225 Query 27212 AGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||| || |||| ||||||||||| || ||||| Sbjct 7046224 GGTTTTACCAGTCAAGGTTTTCACAAAAATCTGCAT 7046189 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || |||||||| || | | |||| | || || ||||||||||| Sbjct 7052592 GTGGACTCCTTCTGGATATTGTAATCAGCAAGGGTGCGGCCATCCTCTAGCTGTTTACCA 7052533 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || || | |||||| || ||||| | ||||| || || ||||||| ||| Sbjct 7052532 GCAAAGATAAGCCTCTGTTGGTCTGGCGGGATCCCCTCCTTGTCTTGGATCTTGGCTTTG 7052473 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | |||||| | | ||| || || || || || | ||||| || || ||| Sbjct 7052472 ACATTATCAATAGTGTCAGAGCTTTCCACCTCAAGGGTGATGGTCTTGCCAGTAAGGGTT 7052413 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 7052412 TTCACAAAGATCTGCAT 7052396 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-G 27077 |||| || || | |||||| |||||||| | || || || || ||||| || ||||| | Sbjct 7052852 TGCCACCACGGAGCCGCAAAACCAAATGGAGGGTTGACTCCTTCTGAATGTTATAGTCTG 7052793 Query 27078 CTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGC 27137 | ||| || | ||||| |||||||| ||||| |||| | | ||| || || || Sbjct 7052792 CAAGGGTTCTGC-CATCTTCAAGCTGTTTTCCGGCAAAAATTAACCTCTGCTGGTCTGGT 7052734 Query 27138 GGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCA 27197 || | |||||| || || ||||| |||| | || | || |||| || Sbjct 7052733 GGGATACCCTCCTTGTCCTGAATCTTCGCCTTCACATTATCGATGGTATCTGAACTCTCC 7052674 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || |||| ||| || | ||| || || |||||||||||||| || ||||| Sbjct 7052673 ACCTCTAAAGTGATGGTTTTCCCAGTGAGAGTTTTCACAAATATCTGCAT 7052624 >seq10 Length=8461613 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | || ||| || | ||| | || || || ||||| || ||||| || | Sbjct 2238795 CCTCCACGAAGCCTCAAAACAAGATGAAGGGTTGATTCCTTTTGTATGTTGTAATCAGCC 2238854 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | | | |||| || ||||| || |||||| | || | ||| ||||| || || || Sbjct 2238855 AAGGTCCTCCCGTCCTCAAGCTGCTTCCCGGCGAAGATCAAACGTTGTTGGTCTGGTGGG 2238914 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || ||||| ||||||| || | | | || | ||||| | | || || Sbjct 2238915 ATCCCTTCCTTATCTTGGATCTTGGCCTTAACGTTATCAATCGTGTCCGAGCTCTCGACC 2238974 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | ||||| | || || |||| ||||| |||||||||||||| Sbjct 2238975 TCCAAGGTTATTGTCTTTCCTGTCAAGGTTTTGACAAAGATTTGCAT 2239021 Score = 86.0 bits (94), Expect = 5e-12 Identities = 121/169 (72%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 27091 CGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTT 27150 |||||||||||||||| |||||| | ||||| | || || || || || | || || | Sbjct 2239321 CGTCTTCGAGCTGTTTCCCGGCGAAGATGAGCCTTTGCTGGTCGGGTGGGATCCCTTCCT 2239380 Query 27151 TATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTA 27210 | || ||||||| || | | | || | ||||| | || || || ||||||| Sbjct 2239381 TGTCTTGGATCTTGGCCTTAACGTTGTCGATGGTGTCGGAACTCTCGACCTCGAGAGTTA 2239440 Query 27211 TAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCTAAAAA 27259 | | ||||| ||||| |||||||| ||||| ||||| || ||||||| Sbjct 2239441 TGGTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCAT--CTTCTAAAAA 2239487 Score = 82.4 bits (90), Expect = 6e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 27091 CGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTT 27150 |||| || |||||||| |||||| | ||||| |||||||| || || || | || || | Sbjct 2239093 CGTCCTCCAGCTGTTTCCCGGCGAAGATGAGCCGCTGTTGGTCGGGAGGGATGCCTTCCT 2239152 Query 27151 TATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTA 27210 | || ||| ||| || | | | || | ||||| | || ||||| || || | Sbjct 2239153 TGTCCTGGATTTTGGCCTTGACGTTGTCAATCGTGTCGGAACTCTCGACTTCGAGGGTGA 2239212 Query 27211 TAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | | |||||| |||| |||||| || |||||||||||| Sbjct 2239213 TGGTTTTGCCGGTCAAAGTTTTGACGAAGATTTGCATA 2239250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424902943434288