Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq26 118 1e-21 seq1 114 2e-20 seq7 96.9 4e-15 seq2 96.9 4e-15 seq19 93.3 5e-14 >seq26 Length=2022356 Score = 118 bits (130), Expect = 1e-21 Identities = 192/271 (71%), Gaps = 9/271 (3%) Strand=Plus/Minus Query 122671 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCC 122730 |||||||| |||||||| || || | || |||||||| || || ||||| | || Sbjct 1746688 TGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGAAAGTTAATCCAGGCATTAACCCG 1746629 Query 122731 CGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACAC 122790 ||||| || |||||| | || |||||||| || |||||||| || || ||||| || Sbjct 1746628 CGCTTTTTTAACCAAAATATCGCGCAGAAACTTCCAGAGAAGAAAATCCCTTCCACGCAA 1746569 Query 122791 GCAAACGCAAAAAGGCGTTCGGCGAAGG--AGCGAGACTTTGCATCAAACCATTTCATTG 122848 ||||| || | || ||||||||||| | ||| || | || | |||||||| || Sbjct 1746568 GCAAAAGCGATTAGCCGTTCGGCGAAAGTTTCCGA-AC----CGTCGATCCATTTCAATG 1746514 Query 122849 CCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTTCT 122908 |||| | || ||||| | | |||||| || |||| || ||| | || | | | |||| Sbjct 1746513 CCCACTCAGCTTTCTTAGCCACACATGGCACTGTTTCGACGGCGTGGAAGAGCCGGTTCT 1746454 Query 122909 TTTCAGATCCA-TCCTTAATGTATTTGTCAA 122938 |||| | | | ||||| ||||| | |||| Sbjct 1746453 TTTC-GTTGGAGTCCTTGATGTAAGTTTCAA 1746424 >seq1 Length=15579451 Score = 114 bits (126), Expect = 2e-20 Identities = 280/420 (67%), Gaps = 6/420 (1%) Strand=Plus/Minus Query 11482 ATCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAA 11541 |||||| ||||| | || ||||| || || || || | || || || | | ||||| Sbjct 14793584 ATCAAGAATATCTGCCCGGTTAGTTGCTGCTATTACAATGATACCTGTGTTACCCTCAAA 14793525 Query 11542 GCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG-CA 11600 |||||||| || || | | || |||| ||||| || || ||||| || | | Sbjct 14793524 ACCATCCATTTCAGTCAAAAGCTGGTTAAGAGTTTGCTCCCTTTCATCGTTCCCACCACC 14793465 Query 11601 TACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATG 11660 || ||||| | | |||| || || |||||||| ||||| | ||||||||||| | Sbjct 14793464 TAT-ACCAGTTCCTCTTTGCCGTCCAACAGCATCAATTTCATCCACAAAGACAATACAGG 14793406 Query 11661 GTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAA 11720 | ||| || ||| | | || ||||| ||||| | |||||| |||||||||| Sbjct 14793405 GGGCATTCTCCTTGGCCTTCTTGAAAAGATCACGAACTCGAGAGGCACCAACACCAACAA 14793346 Query 11721 ACATCTCCACAAAGTTTGCGGCAGAGCACTG--GATGAATGGGACATTTGATTCACCCGC 11778 |||| || ||||| | | |||| | || || |||||| ||| | |||||| || Sbjct 14793345 ACATTTCAACAAACTCAGAACCAGA--AATGGAGAAGAATGGCACACCAGCTTCACCAGC 14793288 Query 11779 GATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCG 11838 || || ||| || || |||||||| || || || || | ||||| | ||| Sbjct 14793287 AATTGCCTTGGCCAGAAGAGTCTTTCCAGTTCCAGGAGGGCCAACAAGAAGAACACCTTT 14793228 Query 11839 GGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTC 11898 ||||| || ||| | || | ||||||| || | ||| || || ||||||| ||| Sbjct 14793227 AGGGATGCGAGCCCCAACTGCAGTAAATCTCTCTGGCTTCTTTAGGAACTCCACAACCTC 14793168 >seq7 Length=10072460 Score = 96.9 bits (106), Expect = 4e-15 Identities = 190/281 (68%), Gaps = 10/281 (4%) Strand=Plus/Plus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| ||||||||||| || | || ||||| ||||| || ||||||||||||||| || Sbjct 7797003 AAATCCATCCATCTCAGTCAACAACTGATTGATTGTCTGCTCTCTCTCATCATTTCCTCC 7797062 Query 11599 CATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACA 11658 | |||||| | | || | || || |||||||||||||| ||||| ||||| || Sbjct 7797063 TCCAAGACCAGCTCCTCTCTGTCTCCCAACAGCATCAATCTCATCTATGAATACAATGCA 7797122 Query 11659 TGG-----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACA 11713 ||| | |||||| || | || || | ||| | || || ||||| || Sbjct 7797123 TGGCGCCTTCGATTTT-----GCCTTCTCGAATAAATCCCTTACTCTGGACGCACCTACT 7797177 Query 11714 CCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCA 11773 ||||| |||| ||||||||| | || || | ||| || || || || | ||| Sbjct 7797178 CCAACGAACAGCTCCACAAACTCTGAAGCTGCGCATGAGAAAAACGGCACCCCGGCTTCT 7797237 Query 11774 CCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 || || | |||| || | || |||||||| || || || Sbjct 7797238 CCTGCTACTGCTCTAGCCAACAGCGTCTTTCCAGTGCCAGG 7797278 >seq2 Length=14367614 Score = 96.9 bits (106), Expect = 4e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 || || |||||||| ||||||||||| || || || | || ||| ||||| | ||| Sbjct 5550730 TGAGGCCTTGGTGTTCCAGCATTGAAAAGTGTCGGAGAAGCATGAGTGAACCATCTTTGA 5550789 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 |||||| ||| || || | | ||||||||||||| ||| || || || | || Sbjct 5550790 GACATCATGTGATAAGTTTTTATAGCAGAATCAATGTCATCCTTATGAATTCCAACAGCA 5550849 Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA--T 112118 |||| ||| ||||||| || || |||| || | | || | || | || |||| | Sbjct 5550850 ACCCTCATTAACATGTGTTGAGGCCTTTCTAT-AACCTTCCCTTGA-ACTTTCAAGAGGT 5550907 Query 112119 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 112167 || | |||| |||||||| | ||||||||| || | ||| ||||||| Sbjct 5550908 AGGACCTCTCGAGGGTTTTAAAGCCAAAGTAATCATAGTCAAAGTCCCG 5550956 >seq19 Length=3572271 Score = 93.3 bits (102), Expect = 5e-14 Identities = 173/250 (69%), Gaps = 8/250 (3%) Strand=Plus/Plus Query 11482 ATCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCA-- 11539 |||||| || || | |||||| || ||||| || | || ||||| | || || Sbjct 2132664 ATCAAGAATTTCAGGCCTATTAGTAGCAGCAATGACGATAACTCCAGTGT---TGCCAGT 2132720 Query 11540 -AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCT-G 11597 || |||||||| || || || |||||||| | ||||| || |||||||||||| || Sbjct 2132721 AAAACCATCCATTTCAGTTAGCAATTGATTTAGAGTTTGCTCCCTCTCATCATTTCCTCC 2132780 Query 11598 GCATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATAC 11657 | || ||||| | | | | | || || |||||||||||||| ||||| || | | Sbjct 2132781 ACCTA-TACCAGTTCCTCTCTCCCTTCCAACAGCATCAATCTCATCTATGAACACCAAGC 2132839 Query 11658 ATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAA 11717 | ||| |||| | || | | ||| ||||| | || ||| || ||||| |||| Sbjct 2132840 ACGGTGGATTAGCCTTTGCCTTGTTAAACAGATCCCTCACTCTTGAAGCTCCCACTCCAA 2132899 Query 11718 CAAACATCTC 11727 |||||||||| Sbjct 2132900 CAAACATCTC 2132909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627984316670400