Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1 95.1 1e-14 >seq1 Length=15579451 Score = 95.1 bits (104), Expect = 1e-14 Identities = 248/369 (67%), Gaps = 12/369 (3%) Strand=Plus/Minus Query 14065 ATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC 14124 |||||| || ||||| | | | ||| ||||| ||||| ||||| || || || Sbjct 14793614 ATCAAACCGTCCTGGCCTCAACAAGGCAGAATCAAGAATATCTGCCCGGTTAGTTGCTGC 14793555 Query 14125 GATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCAGTCAAGAGTTGATT 14181 || |||| ||| || || |||| ||||| |||||||| |||||||| || || || Sbjct 14793554 TATTACAATGATACCTGT---GTTACCCTCAAAACCATCCATTTCAGTCAAAAGCTGGTT 14793498 Query 14182 GATGGTTTGTTCGCGTTCATCATTCGCAGG-CATACCACCCGCACTGCGTTGCTTACCGA 14240 | ||||| || | |||||| ||| || | || ||| | | | |||| || | Sbjct 14793497 AAGAGTTTGCTCCCTTTCATCGTTCCCACCACCTAT-ACCAGTTCCTCTTTGCCGTCCAA 14793439 Query 14241 CGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATT-TTCACGGGCAACTTCAAAG 14299 | || ||||||||||| | || || ||||| || ||| | | || | ||| ||| Sbjct 14793438 CAGCATCAATTTCATCCACAAAGACAATACAGGGGGCATTCTCCTTGGCCTTCTTGAAA- 14793380 Query 14300 ATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAA 14359 | ||| || |||| |||||| ||||| |||||||| || ||||| | | | ||| Sbjct 14793379 AGATCACGAACTCGAGAGGCACCAACACCAACAAACATTTCAACAAACTCAGAACCAGAA 14793320 Query 14360 CATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCC 14418 || | || ||| || || || |||||| || || || ||| || || ||||| || Sbjct 14793319 -ATGGAGAAGAATGGCACACCAGCTTCACCAGCAATTGCCTTGGCCAGAAGAGTCTTTCC 14793261 Query 14419 CGTCCCTGG 14427 || || || Sbjct 14793260 AGTTCCAGG 14793252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618388245307440