Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1 147 3e-30 seq26 93.3 5e-14 seq2 93.3 5e-14 seq19 86.0 7e-12 >seq1 Length=15579451 Score = 147 bits (162), Expect = 3e-30 Identities = 239/336 (71%), Gaps = 6/336 (2%) Strand=Plus/Minus Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9615 |||||| ||||| | || || || || || || |||| |||||||| | | ||||| Sbjct 14793584 ATCAAGAATATCTGCCCGGTTAGTTGCTGCTATTACAATGATACCTGTGTTACCCTCAAA 14793525 Query 9616 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGC-TGGCA 9674 ||||||||| || |||||||| ||||||| |||||| |||| |||||| ||| | | Sbjct 14793524 ACCATCCATTTCAGTCAAAAGCTGGTTAAGAGTTTGCTCCCTTTCATCGTTCCCACCACC 14793465 Query 9675 TACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATG 9734 || ||||| | | |||| ||| || |||||||| ||||| | ||||| || || | Sbjct 14793464 TA-TACCAGTTCCTCTTTGCCGTCCAACAGCATCAATTTCATCCACAAAGACAATACAGG 14793406 Query 9735 GTTGATT-TTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACA 9793 | ||| | | | | ||| ||| ||||| || || || ||| || ||||||||| Sbjct 14793405 GGGCATTCTCCTTGGCCTTCTTGAAA-AGATCACGAACTCGAGAGGCACCAACACCAACA 14793347 Query 9794 AACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGC 9852 ||||| || ||||| | | | ||| || | || ||| || ||| || |||||| || Sbjct 14793346 AACATTTCAACAAACTCAGAACCAGAA-ATGGAGAAGAATGGCACACCAGCTTCACCAGC 14793288 Query 9853 AATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 ||| || ||| ||||||||||| || || || || Sbjct 14793287 AATTGCCTTGGCCAGAAGAGTCTTTCCAGTTCCAGG 14793252 >seq26 Length=2022356 Score = 93.3 bits (102), Expect = 5e-14 Identities = 166/242 (69%), Gaps = 3/242 (1%) Strand=Plus/Plus Query 94702 GAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGAT 94761 || ||||| | |||||| | ||| || ||||||| || ||| | |||||||| || Sbjct 1746450 GAAAAGAACCGGCTCTTCCACGCCGTCGAAACAGTGCCATGTGTGGCTAAGAAAGCTGAG 1746509 Query 94762 TGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTT 94821 ||||| |||| ||| | || ||| | || || || || || |||| ||| Sbjct 1746510 TGGGCATTGAAATGGATCGACGGT---TCGGAAACTTTCGCCGAACGGCTAATCGCTTTT 1746566 Query 94822 GCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAG 94881 || || || || || || ||||||||||| |||||||| || | |||| | || ||| Sbjct 1746567 GCTTGCGTGGAAGGGATTTTCTTCTCTGGAAGTTTCTGCGCGATATTTTGGTTAAAAAAG 1746626 Query 94882 CGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTC 94941 || || | ||||| || | ||||| |||||| | ||||| || || || || ||| Sbjct 1746627 CGCGGGTTAATGCCTGGATTAACTTTCTCAAACGAGTTAATCTCACGAGATGAAGGTCTC 1746686 Query 94942 CA 94943 || Sbjct 1746687 CA 1746688 >seq2 Length=14367614 Score = 93.3 bits (102), Expect = 5e-14 Identities = 159/227 (70%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 104141 GACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAACGGC 104198 |||| |||| || ||| ||||| | |||||||| |||| | ||| |||| || | Sbjct 5550953 GACTTTGACTATGATTACTTTGGCTTTAAAACCCTCGAGAGGTCCTACCTCTTGAAAGT- 5550895 Query 104199 TCGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTC 104258 || | || || || |||| || || ||||||| ||| | || || | || |||| Sbjct 5550894 TCAAGGGAAGGTT-ATAGAAAGGCCTCAACACATGTTAATGAGGGTTGCTGTTGGAATTC 5550836 Query 104259 ATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCA 104318 || ||| ||||||||||||| | | || || ||| |||||| ||| | ||||| Sbjct 5550835 ATAAGGATGACATTGATTCTGCTATAAAAACTTATCACATGATGTCTCAAAGATGGTTCA 5550776 Query 104319 TTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAA 104365 ||| || | || || || ||||||||||| |||||||| || ||| Sbjct 5550775 CTCATGCTTCTCCGACACTTTTCAATGCTGGAACACCAAGGCCTCAA 5550729 >seq19 Length=3572271 Score = 86.0 bits (94), Expect = 7e-12 Identities = 171/249 (69%), Gaps = 6/249 (2%) Strand=Plus/Plus Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9615 |||||| || ||| | ||| || || || ||||| | || || || | | ||| Sbjct 2132664 ATCAAGAATTTCAGGCCTATTAGTAGCAGCAATGACGATAACTCCAGTGTTGCCAGTAAA 2132723 Query 9616 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT-GGCA 9674 ||||||||| || || | | ||| || | |||||| |||| |||||||| || | Sbjct 2132724 ACCATCCATTTCAGTTAGCAATTGATTTAGAGTTTGCTCCCTCTCATCATTTCCTCCACC 2132783 Query 9675 TACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATG 9734 || ||||| | | | | |||| || |||||||||||||| ||||| || | ||| | Sbjct 2132784 TA-TACCAGTTCCTCTCTCCCTTCCAACAGCATCAATCTCATCTATGAACACCAAGCACG 2132842 Query 9735 GTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCACACCAAC 9792 || |||| | || | ||| ||||||| ||| |||| || ||||| ||||| Sbjct 2132843 GTGGATTAGCCTTTGCCTTGTTAAACAGATCCC--TCACTCTTGAAGCTCCCACTCCAAC 2132900 Query 9793 AAACATCTC 9801 ||||||||| Sbjct 2132901 AAACATCTC 2132909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583216515923760