Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq26 107 2e-18 >seq26 Length=2022356 Score = 107 bits (118), Expect = 2e-18 Identities = 303/451 (67%), Gaps = 16/451 (4%) Strand=Plus/Plus Query 59677 ACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTG 59736 ||| ||| | || ||||||| ||||| |||||||| || || ||||| || | Sbjct 1746247 ACGGCGAACGCCACTTCATCACTCACGTCCTCGCCTTCTTTGCAGCCTCCGATGGTATCG 1746306 Query 59737 TGATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGT 59796 | | |||||| | | | | || ||||| ||||| || ||||||| || ||| Sbjct 1746307 TCCTCGAAAATCTCGCCGTCCGGTTCATGAAGGAAGTCCAAATCTCCGAGGCTCGTGCGT 1746366 Query 59797 TCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATC 59855 |||| | | || ||| || ||| |||||||||||||| ||| ||| | | Sbjct 1746367 TCTATGGCTTCCAAATCGC-CATCGAAAATATCCACTCCGAGATGTATAGTCTCCTCCTT 1746425 Query 59856 GATAAGTTGGTCAAGGA-TCCG--GAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGAC- 59911 || | | ||||||| ||| ||| |||| | || || |||| ||| | || || Sbjct 1746426 GAAACTTACATCAAGGACTCCAACGAAAAGAA--CCGG-CTCTTCCACGCCGTCGAAACA 1746482 Query 59912 GTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GA--GTCCTGGAGC 59968 || || | || | ||||| || ||||| || | ||||| || || | ||| Sbjct 1746483 GTGCCATGT-GTGGCTAAGAAAGCTGAGTGGGCATTGAAATGGATCGACGGTTC-GGA-- 1746538 Query 59969 ATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTC 60028 | | || || |||| || || |||||||| ||||||||||| || ||||||||||| Sbjct 1746539 AACTTTCGCCGAACGGCTAATCGCTTTTGCTTGCGTGGAAGGGATTTTCTTCTCTGGAAG 1746598 Query 60029 GTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAA 60088 ||||| || || || ||| | |||||||| || | ||||| || | | |||||| || Sbjct 1746599 TTTCTGCGCGATATTTTGGTTAAAAAAGCGCGGGTTAATGCCTGGATTAACTTTCTCAAA 1746658 Query 60089 CGAGCTGATTTCCCGGGACGAGGGCCTCCAT 60119 |||| | || || || || || || |||||| Sbjct 1746659 CGAGTTAATCTCACGAGATGAAGGTCTCCAT 1746689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548483153254560