Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq30 95.1 1e-14 seq8 89.7 6e-13 seq6 86.0 7e-12 seq14 84.2 2e-11 seq2 84.2 2e-11 >seq30 Length=1333793 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/74 (89%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 239180 TGCTTTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 239121 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 239120 TGAGCTACGAAAGC 239107 >seq8 Length=9139585 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/76 (87%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79623 ACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCA 79681 |||||| ||| |||| |||| |||| ||||||||||||||||||||||||||| |||| Sbjct 6225251 ACTGCTCTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCA 6225192 Query 79682 ATTGAGCTACGAAAGC 79697 | |||||||||| ||| Sbjct 6225191 ACTGAGCTACGAGAGC 6225176 >seq6 Length=10737078 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| |||| Sbjct 10186209 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCATC 10186150 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 10186149 TGAGCTACGAAAGC 10186136 >seq14 Length=6982396 Score = 84.2 bits (92), Expect = 2e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79623 ACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCA 79681 ||||||||| |||| | || |||| ||||||||||||||||||||||||||| |||| Sbjct 311434 ACTGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCA 311375 Query 79682 ATTGAGCTACGAAAGC 79697 | ||||||| |||||| Sbjct 311374 ACTGAGCTATGAAAGC 311359 >seq2 Length=14367614 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 79621 AGACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-AC 79679 || ||||||| | |||| |||| | || ||||||||||||||||||||||||||| || Sbjct 3137386 AGCCTGCTTTTGTTGAGAGTTGAACCCAAGACCTCCCGCTTACTAAACGGGTGCTCTAAC 3137445 Query 79680 CAATTGAGCTACGAAAGC 79697 ||| ||||| |||||||| Sbjct 3137446 CAACTGAGCCACGAAAGC 3137463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547174452625200