Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_028936.1 Length=59052 Score E Sequences producing significant alignments: (Bits) Value seq4891 109 2e-19 >seq4891 Length=1710 Score = 109 bits (120), Expect = 2e-19 Identities = 309/463 (67%), Gaps = 14/463 (3%) Strand=Plus/Plus Query 33191 ACCAGGAAGACCCAGCGCCAGCCCAGGTGGGCGGTGATGATCCCTGACAGGGCGAACCCG 33250 |||||||||| ||||||||||| ||| | || | || ||| | | ||||| |||| Sbjct 929 ACCAGGAAGATCCAGCGCCAGCTCAGCAGCGCCACCAGGACCCC-GCC--GGCGAGCCCG 985 Query 33251 AGAACCAGGCCGC--AGCTGGCC-ACGGCCGCCCACACACTCAGGGCCCGTGAGCGGCGC 33307 | | |||| ||| ||| | |||||||||| | | || ||||| || || ||| Sbjct 986 CCGATCGCCCCGCCCAGCCCGCCCATGGCCGCCCACGCGCCGAGCGCCCGCGACCG-CGC 1044 Query 33308 GGC-CCCTCGGGGAAGAGCAGCACGATGGTCGCCATCGCCGCGGGC-AGCGCGACAGCCT 33365 || ||||||| ||| | || | ||| || || |||||| || || || ||| Sbjct 1045 GGGTCCCTCGGCGAACGACGTGGTGAGGATCGTCAGCGACGCGGGGGAGAGC-ACTGCCC 1103 Query 33366 CGCCCGCGCCCTGGAGCAGGCGGGCCGCGACCAGGA--CCGGAAAGGACGGGGCCAGGCC 33423 |||| |||||| | ||||| || | ||| | |||| ||| ||| || || Sbjct 1104 CGCCGAGGCCCTGCGCCGCCCGGGCGGCCAGCAGCAGCCCGGG--GGAGTCGGCGAGCCC 1161 Query 33424 AGCCAGCAGGGAGGCCGCGCCGAAGACGCTCGTGCCGACCAGGAGGGTGCGGCGGCGGCC 33483 || |||| ||||| ||||| | || |||||| |||| | || || || || Sbjct 1162 GCCCGCCAGGCTCGCCGCCCCGAACAGGCCGAGGCCGACGAGGAACATCCGCCGCCGCCC 1221 Query 33484 GAGAAGGTCACCGAGCCGACCGCCGAGCATCAGCAGCCCTCCGCCGGTGATGGTGTAGCC 33543 | ||||| || || |||||||||| ||| | ||| || || || |||||| | Sbjct 1222 GTACAGGTCGGCGGCGCGCCCGCCGAGCAGCAGGAACCCGGCGAAGGCGAGCGTGTAGGC 1281 Query 33544 GACCACGACCCAGGTCAGGGAGTGTCCCCCGACGCCGAGGTCCGCGCCGATCGAGGGCAG 33603 | ||| ||||| | ||| || | ||| | | || | ||| |||||||||||| Sbjct 1282 GCTCACCACCCACGGCAGCCCGTCGGGCGCGAAGGCCAGCGCGTCGCGGATCGAGGGCAG 1341 Query 33604 CGCGATGTTGACCACGGTCACGTCGACCGCGATGAAGAACTGC 33646 ||||| ||| ||||| | |||||||| | ||| | ||||||| Sbjct 1342 CGCGACGTTCACCACCGACACGTCGAGCACGACCATGAACTGC 1384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 188831178860632