Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq14 84.2 2e-11 >seq14 Length=6982396 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| || || || || || ||| || || | || || |||||| || Sbjct 1120472 ATGCAAATCTTTGTCAAGACCCTGACGGGCAAAACCATAACCTTGGAAGTTGAAAGCTCC 1120413 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || |||| || || || || ||||||||||| |||| ||| | Sbjct 1120412 GACACCATCGACAAC--GTGAAGGCCAAGATCCAGGACAAAGAAGGAATTCCCCCGGACC 1120355 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| || | || ||||| || || ||| | || |||| || | ||| | ||||||| Sbjct 1120354 AGCAAAGGCTTATCTTTGCTGGGAAGCAACTCGAGGACGGCCGAACTTTGGCGGATTACA 1120295 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| ||| || | || |||| || ||| | ||||| || Sbjct 1120294 ACATCCAAAAGGAGTCAACCCTCCACCTGGTCTTACGTCTCCGTGGTGG 1120246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355836056618598