Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq10 89.7 4e-13 seq9 82.4 7e-11 >seq10 Length=8461613 Score = 89.7 bits (98), Expect = 4e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| ||||| || |||||||| || | || || |||| || |||||||| || || || Sbjct 2239058 CTCCTTTTGGATGTTATAATCAGCCAAAGTACGGCCGTCCTCCAGCTGTTTCCCGGCGAA 2239117 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || || ||||| ||||||| || | || || |||||| |||||| |||| ||| Sbjct 2239118 GATGAGCCGCTGTTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATTTTGGCCTTGA-CGT 2239176 Query 39213 CGCCAC-CGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 | || ||| ||| ||| || || | ||||| |||| || |||| ||||| | Sbjct 2239177 TGTCAATCGTGTCGGAACTCTCGACTTCGAGGGTGATGGTTTTGCCGGTCAAAGTTTTGA 2239236 Query 39272 CAAAGATTTGCAT 39284 | ||||||||||| Sbjct 2239237 CGAAGATTTGCAT 2239249 >seq9 Length=8984705 Score = 82.4 bits (90), Expect = 7e-11 Identities = 88/114 (77%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGT-AACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 ||||| || |||| | || ||||| || || || ||| ||||| || |||||||| || Sbjct 1646382 CCTCCCCT-AAGCCTCAAAACCAAGTGAAGAGTCGACTCCTTTTGAATGTTATAATCTGC 1646440 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC 39170 ||| ||||| | || |||||||||||||||||||| || | | |||||| || Sbjct 1646441 AAGAGTTCGACCTTCTTCAAGCTGTTTGCCCGCAAAAATCAATCTCTGCTGATC 1646494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429513802081562