Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq14 107 1e-18 seq9 100 2e-16 seq4 100 2e-16 seq2 98.7 7e-16 seq10 95.1 8e-15 >seq14 Length=6982396 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || || || || ||||| || ||| | || || || | || Sbjct 1120016 ATGCAGATTTTCGTCAAGACTCTGACAGGGAAAACCATTACTTTGGAGGTGGAGAGCTCG 1119957 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| |||| | ||| ||| ||||| ||||| | || |||||||| Sbjct 1119956 GATACGATTGATAATGTTAAGGC-AAAGATTCAGGACAAGGAAGGGATTCCACCAGATCA 1119898 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | || || ||||| || || ||| ||||||| | | | ||||| | |||||||| Sbjct 1119897 GCAAAGGTTGATTTTTGCTGGGAAGCAATTGGAAGATGGAAGGACTTTGGCTGATTACAA 1119838 Query 23790 CATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 1119837 TATTCAGAAGGAGTCCAC 1119820 >seq9 Length=8984705 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || || |||||||| ||||| || || || | |||||||| | Sbjct 7052852 ATGCAAATTTTTGTCAAGACCCTCACTGGAAAGACTATTACCTTGGAAGTTGAGAGTTCT 7052911 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | ||||| || || ||||| |||||| | || ||||||||| Sbjct 7052912 GATACCATTGACAATGTAAAAGCTAAGATCCAGGACAAGGAAGGTATCCCTCCAGATCAA 7052971 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | |||||||| |||||||| |||| || | | || | | |||||||| Sbjct 7052972 CAGAGGCTGATATTTGCTGGCAAACAGTTGGAGGATGGGAGGACACTTGCAGATTACAAT 7053031 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || ||||||||||| || | || || || | | |||| |||||| Sbjct 7053032 ATCCAAAAAGAGTCAACCCTCCACTTGGTGCTGCGTCTGCGTGGAGGA 7053079 Score = 87.8 bits (96), Expect = 1e-12 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTC-GTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||| ||||| || || ||||||| | ||| || || || | |||||||| | Sbjct 7045962 ATGCAAATTTTGTGTCAAGCCCCTCACTG-AAAGACTATTACCTTGGAAGTTGAGAGTTC 7046020 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| | ||||| || || ||||| |||||| | || |||||||| Sbjct 7046021 TGATACCATTGACAATGTAAAAGCTAAGATCCAGGACAAGGAAGGTATCCCTCCAGATCA 7046080 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | | ||||||||||||||||| |||| || | | || | | |||||||| Sbjct 7046081 ACAGAGGCTGATATTTGCCGGCAAACAGTTGGAGGATGGGAGGACACTTGCAGATTACAA 7046140 Query 23790 CATACAAAAAGAGTCCACATTACATTT 23816 || ||||||||||| || | ||||| Sbjct 7046141 TATCCAAAAAGAGTCAACCCTCCATTT 7046167 >seq4 Length=12062019 Score = 100 bits (110), Expect = 2e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| |||||| | || || ||||| ||||| ||||| || || | Sbjct 4154218 AAGATGCAGATCTTCGTGAAAACCTTAACCGGCAAAACCATCACCCTCGAGGTGGAGAGC 4154277 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | || | | || || || ||||| ||||| | || || ||| Sbjct 4154278 TCAGACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGAT 4154337 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 |||||||| || || || |||||||| ||||| ||||||| || || | | |||||| Sbjct 4154338 CAACAGCGCTTGATCTTCGCCGGCAAGCAACTTGAAGACGGCCGAACCCTTGCGGATTAC 4154397 Query 23788 AACATACAAAAAGAGTCCAC 23807 || || ||||| || || || Sbjct 4154398 AATATCCAAAAGGAATCGAC 4154417 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| |||||| | || || ||||| || ||||| || || || || Sbjct 4154677 ATGCAGATTTTCGTCAAAACCTTGACCGGGAAAACTATTACTCTGGAGGTAGAGAGTTCG 4154736 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | | || |||||| || || ||||| | || || ||||| Sbjct 4154737 GATACAATTGATAACGTCAAGGCAAAAATCCAGGATAAGGAAGGGATCCCTCCGGATCAG 4154796 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || ||||| ||||| || || |||| |||| | || | | |||||||| Sbjct 4154797 CAGAGGTTGATATTCGCCGGGAAGCAGTTGGAGGACGGCAGGACCCTTGCGGATTACAAT 4154856 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 4154857 ATCCAGAAGGAGTCCAC 4154873 >seq2 Length=14367614 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || || ||||| || |||||||||||| | || || || | | Sbjct 9074505 ATGCAAATCTTTGTCAAGACTCTCACAGGTAAAACGATCACTTTGGAGGTAGAGAGCTCA 9074564 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| | || | || ||| || ||||| ||| | || ||||| || Sbjct 9074565 GACACTATTGACAATGTCAAGGC-CAAGATTCAGGATAAAGAGGGTATCCCACCAGACCA 9074623 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || ||||| || |||||||| ||||| | | | || | | ||||| || Sbjct 9074624 GCAGAGGTTGATTTTTGCTGGAAAACAACTTGAAGATGGAAGGACACTTGCTGATTATAA 9074683 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| ||||| ||||| || | || || ||| Sbjct 9074684 CATTCAAAAGGAGTCAACCCTTCACTTGGTT 9074714 >seq10 Length=8461613 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || |||||| | || ||||| || || || | || || || | || Sbjct 2239021 ATGCAAATCTTTGTCAAAACCTTGACAGGAAAGACAATAACCTTGGAGGTCGAGAGCTCG 2238962 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| || |||| | || | | || || ||||| | || ||||| || Sbjct 2238961 GACACGATTGATAACGTTAAGGCCAAGA-TCCAAGATAAGGAAGGGATCCCACCAGACCA 2238903 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||||| || || ||||| || || || || |||| | || || | |||||||| Sbjct 2238902 ACAACGTTTGATCTTCGCCGGGAAGCAGCTTGAGGACGGGAGGACCTTGGCTGATTACAA 2238843 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||||||||| || || || | ||| | ||||| ||| | || |||||| Sbjct 2238842 CATACAAAAGGAATCAACCCTTCATCTTGTTTTGAGGCTTCGTGGAGGA 2238794 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| || || ||| | || |||||||| ||||| | || || || | Sbjct 2238794 AATGCAGATTTTTGTCAAGACCTTGACTGGAAAAACAATCACCTTGGAGGTGGAAAGTTC 2238735 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| || | || | | || ||| ||| || || ||||| | || |||||||| Sbjct 2238734 GGATACAATCGATAACGTCAAGGCAAAGATTCAGGATAAGGAAGGAATCCCCCCAGATCA 2238675 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | | || |||||||| |||||| |||| || | | ||||||| ||||| || Sbjct 2238674 GCAAAGGCTTATCTTTGCCGGGAAACAATTGGAGGATGGGAGGACTTTAGCTGATTATAA 2238615 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || |||||||| || Sbjct 2238614 CATTCAGAAAGAGTCTAC 2238597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337984578205592