Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq26 167 3e-36 seq2 96.9 5e-15 >seq26 Length=2022356 Score = 167 bits (184), Expect = 3e-36 Identities = 568/883 (64%), Gaps = 4/883 (0%) Strand=Plus/Minus Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894 ||||| || || ||| || || || || || | ||||||||| ||||| ||||||||| Sbjct 1747009 GACATGACCGCCGCTTTCTGGTACTCTCCAACTCTTTTCTCGAAGAAATTGGTTTTGCCT 1746950 Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAAT 47954 | ||| || || |||||| ||||||| || ||| | |||| ||||| | | Sbjct 1746949 TGCAACGAAATCAGTTCCATCCAATCAAAAGGGTTAGCCACATTGTAAATCCTCCCGTAC 1746890 Query 47955 CCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAA 48014 ||||| | | || | |||||| ||||| || || || |||||| || | Sbjct 1746889 CCTAACGCCCCCAACAACCGATCTGCGACGAACTCGATGTACTGACTCATCAGCTCTCCG 1746830 Query 48015 TTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACA 48074 ||||| || | | | || ||||| || | |||||| || ||| || Sbjct 1746829 TTCATCCCAACCAATGCGCACGGCAGAGCATCACATACAAACTCCCTCTCTATATCCACT 1746770 Query 48075 GCATCCACTATTATCGATGTTACCGTTTCCTCACTTGG--TGGATACAACAAATGTTTAA 48132 || ||| | |||| | | || | || || || | | || | | | || Sbjct 1746769 GCGTCCCTCACTATCCCTCTCACGCTCTCTTCGCTCAGCTTTGACCGGAGGAGGGAGTA- 1746711 Query 48133 ACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAA 48192 || || || || ||||| ||||| ||||||||||||| ||||| ||||| || | Sbjct 1746710 -CAGCAAGCAAGCGAAATCGCAATGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGA 1746652 Query 48193 ATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAG 48252 | || | || ||||||| || || ||||| | ||||||||| || |||| ||||| Sbjct 1746651 AAGTTAATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCGCGCAGAAACTTCCAG 1746592 Query 48253 AAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGT 48312 | ||||| || ||||| ||| ||||| ||| | || | || || || | | Sbjct 1746591 AGAAGAAAATCCCTTCCACGCAAGCAAAAGCGATTAGCCGTTCGGCGAAAGTTTCCGAAC 1746532 Query 48313 TGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAG 48372 || ||||| |||||| ||||| ||||| ||||| |||| |||||| | | Sbjct 1746531 CGTCGATCCATTTCAATGCCCACTCAGCTTTCTTAGCCACACATGGCACTGTTTCGACGG 1746472 Query 48373 CATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTAT 48432 | | ||||| ||| ||||| ||| || || | |||||| || | | ||||||| Sbjct 1746471 CGTGGAAGAGCCGGTTCTTTTCGTTGGAGTCCTTGATGTAAGTTTCAAGGAGGAGACTAT 1746412 Query 48433 ACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTG 48492 |||| |||||||| |||||||| || || || || || || || || | || || | Sbjct 1746411 ACATCTCGGAGTGGATATTTTCGATGGCGATTTGGAAGCCATAGAACGCACGAGCCTCGG 1746352 Query 48493 TGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAG 48552 ||| || || ||| | || || | || | ||| || || || ||||| | Sbjct 1746351 AGATTTGGACTTCCTTCATGAACCGGACGGCGAGATTTTCGAGGACGATACCATCGGAGG 1746292 Query 48553 CAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCC 48612 | ||||| || || | || || | || || | |||| | || || | | || Sbjct 1746291 CTGCAAAGAAGGCGAGGACGTGAGTGATGAAGTGGCGTTCGCCGTCGGTAAGAGTTTCCC 1746232 Query 48613 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTT 48672 ||| | ||| || | ||| |||||||| || |||||||| || || || |||| Sbjct 1746231 AGTGGCGTAGATCCGACGAGAGATCGACTTCTTCGGCGGTCCAAAAGGAGGCTTCGGCTT 1746172 Query 48673 TTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAAT 48715 | || ||||| | ||||| | ||||||||| ||||| || Sbjct 1746171 TCTTGTACATTTCCCATACTTGCGGGTATTGGATCGGGAACAT 1746129 >seq2 Length=14367614 Score = 96.9 bits (106), Expect = 5e-15 Identities = 126/172 (73%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 ||||| |||||| |||||||| ||| |||||||| || |||||| ||| ||| || Sbjct 5549912 CTCTCGTTCATAATGAGTATACAGCTTCTCAAATTCTTCACCCCAACAATCTGCCAGGCC 5549971 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTA-ACTCGTTTCATAA 78015 || ||||| || || | | |||||| | |||| | | || |||| || ||||| Sbjct 5549972 TGGAGCCTCATTAGGACAGAAGATTGACCATTGCCCAT-TACTTTGGACTCTTTGCATAA 5550030 Query 78016 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 |||||||||| | ||| |||||| ||||||||| || | | ||| ||||| Sbjct 5550031 AGAGATCAGGCACCCAAAGAGCATAAAATAGATCACGAGCCCGATGCTCTTC 5550082 Score = 96.9 bits (106), Expect = 5e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| ||||| | ||| | || |||| ||| | |||| || |||||| | ||| || Sbjct 5550399 CCTCCTTGATCAACATAACGAGCAGTGTCATTGAACACTCGCAGCATTGGGACAATGCCA 5550458 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 |||||||| |||||||||||| |||||||||||| | || ||||| || || || Sbjct 5550459 TTAGATGTACCATTTGTTCCACGAATATAACTTCCTGTGGCTCGAATGTTGTGAACAGAG 5550518 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || || ||||| || || || | ||| || ||||| ||||| || || Sbjct 5550519 ACACCAATCCCTCCAGCTGATTTGCTAATAACAGCACACTCCTTCAAAGTATCATATATT 5550578 Query 78339 CCCTCTATACTGTCATCCATCAT 78361 || || ||||| ||||| |||| Sbjct 5550579 CCTTCAATACTATCATCTTTCAT 5550601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694616057271360