Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq2 123 4e-23 seq7 84.2 3e-11 >seq2 Length=14367614 Score = 123 bits (136), Expect = 4e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| ||||| | ||| | ||||||| ||| | |||| || |||||| | |||||| Sbjct 5550399 CCTCCTTGATCAACATAACGAGCAGTGTCATTGAACACTCGCAGCATTGGGACAATGCCA 5550458 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 ||||||||||||||||||||| |||||||||||| || ||||| || || ||| Sbjct 5550459 TTAGATGTACCATTTGTTCCACGAATATAACTTCCTGTGGCTCGAATGTTGTGAACAGAG 5550518 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || || ||||| || ||| || | |||||| ||||| || ||||| || Sbjct 5550519 ACACCAATCCCTCCAGCTGATTTGCTAATAACAGCACACTCCTTCAAAGTATCATATATT 5550578 Query 76934 CCCTCTATACTATCATCCATCAT 76956 || || ||||||||||| |||| Sbjct 5550579 CCTTCAATACTATCATCTTTCAT 5550601 Score = 89.7 bits (98), Expect = 7e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||||| ||||| || | ||| ||||| ||||||||||||||| ||| ||| | | | Sbjct 5550742 GTTCCAGCATTGAAAAGTGTCGGAGAAGCATGAGTGAACCATCTTTGAGACATCATGTGA 5550801 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 || |||| ||| | | || || || | ||||||||| ||||| || | ||| ||| Sbjct 5550802 TAAGTTTTTATAGCAGAATCAATGTCATCCTTATGAATTCCAACAGCAACCCTCATTAAC 5550861 Query 77114 ATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 77173 || || ||||| | ||||| | ||| | | |||||| | ||| || | || | Sbjct 5550862 ATGTGTTGAGGCCTTTCTATAACCTTCCCTTGAACTTTCAAGAGGTAGGACCTCTCGAGG 5550921 Query 77174 GTTTTAAAACCAAAATA 77190 |||||||| ||||| || Sbjct 5550922 GTTTTAAAGCCAAAGTA 5550938 Score = 87.8 bits (96), Expect = 3e-12 Identities = 115/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 ||||| |||||| || ||||| | | |||||||| || |||||| ||| ||| || Sbjct 5549912 CTCTCGTTCATAATGAGTATACAGCTTCTCAAATTCTTCACCCCAACAATCTGCCAGGCC 5549971 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTA-ACCCGTTTCATAA 76610 ||| ||||| ||||| | | |||||| | |||| | | || || | || ||||| Sbjct 5549972 TGGAGCCTCATTAGGACAGAAGATTGACCATTGCCCAT-TACTTTGGACTCTTTGCATAA 5550030 Query 76611 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCG 76647 |||||||||| | ||| |||||| ||||||||| || Sbjct 5550031 AGAGATCAGGCACCCAAAGAGCATAAAATAGATCACG 5550067 Score = 86.0 bits (94), Expect = 9e-12 Identities = 92/123 (75%), Gaps = 14/123 (11%) Strand=Plus/Plus Query 76088 ATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAA 76147 || |||| ||||| || |||||||||||||||||||| |||||||| | | || Sbjct 5549069 ATGAATGTGTCTGCAAGCCCCTGAACTCCAATACCAATTGGTCTATGGC-------GCAA 5549121 Query 76148 ATTTCAGCTTCTGG-------AATAGGGTAATAATTAATATCTATAATTTTATTGAGATT 76200 |||| | ||||||| || |||||| ||||||| ||| || ||||| || ||||| Sbjct 5549122 ATTTGATCTTCTGGCAGTTTCAACAGGGTAGTAATTAACATCAATTATTTTGTTAAGATT 5549181 Query 76201 TCT 76203 ||| Sbjct 5549182 TCT 5549184 >seq7 Length=10072460 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 ||||||||||||||| || || |||| ||||||||||||| | ||| | || Sbjct 1526803 AGTTCCTGCATTAAA-AAGGTTGGAGTAGCATGAGTGAACCTGCACTGAGACATCCAATG 1526861 Query 77053 GTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAA 77112 |||||||| ||| | | || ||||| || ||| || || ||||| || | |||||| Sbjct 1526862 GTATGTTTTGATAGCAGAGTCAATATCAACTTTATGGATACCAACAGCAAC-CTCATCAA 1526920 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172 ||| || || || | ||| ||| || || ||||| | | ||| | |||| | Sbjct 1526921 CATCTGTTGTGGCCTTTCAACAACTTTGCCATCCATTTTAAGTAGGTAAGGACTTTCGAG 1526980 Query 77173 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||||| || |||||||| | ||| ||| ||||| || || || || Sbjct 1526981 GGTTTTGAAGCCAAAATAATCATATTCAAAATCTCTGTCATATATGAT 1527028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712880270455680