Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq4 98.7 1e-15 >seq4 Length=12062019 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 176161 CTGACGATCAGTATATTCTGGATGCTGCTGAGGAAGCAGGAGTTGAACTCAACTACTCGT 176220 |||| ||| | || || | |||||||||||||| ||||||||||| || ||| || | Sbjct 8093543 CTGATGATAAATACATCTTAGATGCTGCTGAGGAGGCAGGAGTTGACCTGCCCTATTCTT 8093484 Query 176221 GCCGCGCTGGTGCCTGTTCGAGTTGTGCAGGAAAACTCATCTCGGGCACGGTAGATCAAA 176280 || | ||||| || || || | ||||| || || | || || || | || |||||| Sbjct 8093483 GCAGGGCTGGAGCTTGCTCCACATGTGCTGGGAAGATAATTTCAGGTTCAGTGGATCAAT 8093424 Query 176281 GCGATCAATCGTTCCTTGATGATGACCAGATCGATGCAGGTTTCATTCTGACTTGTGTTT 176340 || || |||||||||||| | || || || | || | | ||||||||||||| Sbjct 8093423 CTGACGGTTCCTTCCTTGATGATAAACAAATGGAGGAGGGATATGTGCTGACTTGTGTTT 8093364 Query 176341 CATATCCTACGAGCGATTGTGTGATTGAGACTGAGAAAGAAG 176382 |||| || || || |||| ||| | ||| | || |||| Sbjct 8093363 CATACCCGACCTCAGACTGTGAGATCCACACTCACAAGGAAG 8093322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596261925375840