Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq13 152 5e-32 seq5 116 3e-21 seq4 105 6e-18 seq1649 96.9 3e-15 seq9 95.1 1e-14 seq14 93.3 4e-14 seq2 86.0 6e-12 >seq13 Length=7441454 Score = 152 bits (168), Expect = 5e-32 Identities = 174/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 |||| ||||| || || | ||||| || || ||| ||||||||| ||||||||||||| Sbjct 4972706 CGCCACCGCGGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCGG 4972647 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 ||||| || |||| || |||||||||||||||||||| || || |||||||||| | Sbjct 4972646 CTAGGGTCCGGCCGTCTTCAAGCTGCTTGCCGGCGAATATGAGACGTTGTTGGTCCGGTG 4972587 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCC 41812 | | || ||||||| | || | || || | ||| | | | |||||| || || Sbjct 4972586 GGATGCCTTCCTTGT-CTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGGATTCG 4972528 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||||| ||||| || |||||||| || || || ||||| ||||||||| Sbjct 4972527 ACCTCCAAGGTTATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATG 4972477 >seq5 Length=11097736 Score = 116 bits (128), Expect = 3e-21 Identities = 174/242 (72%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 |||| || | ||||| | || || || || ||| |||||||| ||||| ||||||| Sbjct 4357034 CGCCACCCCTGAGACGGAGAACGAGGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCGG 4356975 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCC-GCG 41752 | |||||| |||| |||||||||||||||||||| || || || || |||||| ||| Sbjct 4356974 CTAAGGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCCGGCG 4356915 Query 41753 GGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTC 41811 ||| || ||||||| | || | || |||| || | | | ||||| || || Sbjct 4356914 GGATTCCT-TCCTTGT-CTTGGATCTTGGCTTTGACATTGTCGATGGTGTCAGAGGATTC 4356857 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTTATCGAT 41871 ||||| | ||||| || || ||||| || || || ||||| |||||||| || || | Sbjct 4356856 GACCTCGAGGGTTATGGTCTTCCCCGTTAGGGTTTTGACGAAGATCTGCATCTTTGCGTT 4356797 Query 41872 GG 41873 || Sbjct 4356796 GG 4356795 >seq4 Length=12062019 Score = 105 bits (116), Expect = 6e-18 Identities = 165/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| || | | ||| || || || || |||||||| || || ||||||| Sbjct 4154676 GCCTCCGCGCAGCCTGAGCACAAGGTGAAGGGTTGATTCCTTCTGGATATTGTAGTCGGC 4154617 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| |||| |||||||||||||| ||||| |||| ||||||||||||| || Sbjct 4154616 CAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGTTGGTCCGGAGG 4154557 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACT 41810 | || |||||||| | || | || || | |||| | | | ||||| ||| | Sbjct 4154556 GATGCCCTCCTTGT-CTTGGATCTTGGCCTTAACGTTGTCGATCGTGTCAGAGCT---TT 4154501 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || || | || || || || || || || || || ||||| |||||||| Sbjct 4154500 CGACTTCAAGAGTGATGGTCTTGCCGGTTAGGGTTTTGACGAAGATCTGCAT 4154449 Score = 98.7 bits (108), Expect = 9e-16 Identities = 172/245 (70%), Gaps = 9/245 (4%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | ||||| || || || ||||| || || || || || | Sbjct 4154447 CCGCCACGGAGACGGAGTACCAGGTGGAGAGTCGATTCCTTTTGGATATTGTAATCCGCA 4154388 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| || || |||||||||||||| |||| ||||||||| || | ||| Sbjct 4154387 AGGGTTCGGCCGTCTTCAAGTTGCTTGCCGGCGAAGATCAAGCGCTGTTGATCAGGAGGA 4154328 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | || ||||||| | || | || || | ||| | | | ||||| ||| ||| Sbjct 4154327 ATGCCTTCCTTGT-CTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCTGAGCT---CTC 4154272 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT-ATCGA 41870 |||||| | || || ||||| || || | || || ||||| |||||||| || |||| Sbjct 4154271 CACCTCGAGGGTGATGGTTTTGCCGGTTAAGGTTTTCACGAAGATCTGCATCTTGTTCGA 4154212 Query 41871 TGGAT 41875 |||| Sbjct 4154211 GGGAT 4154207 Score = 93.3 bits (102), Expect = 4e-14 Identities = 154/215 (72%), Gaps = 8/215 (4%) Strand=Plus/Minus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||| || || || ||| ||||||||| || || || || | ||||| | |||| || Sbjct 4154886 CACAAGGTGAAGAGTGGACTCCTTCTGGATATTGTAATCCGCAAGGGTCCTGCCGTCCTC 4154827 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCC-GCGGGAACGCTCTCCTTGTCCA 41771 | |||||| ||||||||||||| | ||| || ||| | |||| | || ||||| ||| Sbjct 4154826 CAACTGCTTCCCGGCGAATATCAACCTCTGCTGATCCGGAGGGATCCCT-TCCTTATCC- 4154769 Query 41772 TGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGA---CTCCACCTCCACCGTTATCG 41828 || ||||||| | ||| || | ||| | ||| ||| ||||||| || || | Sbjct 4154768 TGGATTTTTGCCTTGACGTTATCA-ATTGTATC-CGAACTCTCTACCTCCAGAGTAATAG 4154711 Query 41829 TTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| || |||| || || ||||||||||||||| Sbjct 4154710 TTTTCCCGGTCAAGGTTTTGACGAAAATCTGCATG 4154676 >seq1649 Length=3542 Score = 96.9 bits (106), Expect = 3e-15 Identities = 157/222 (71%), Gaps = 8/222 (4%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || || |||| |||||| || |||||| || ||||||||||| | || || | | Sbjct 801 AGGCGCAAAACCAAATGCAGGGTTGACTCCTTTTGGATGTTATAGTCTGCAAGTGTCCTC 742 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||| || || || |||| | |||||||| | || | | |||| Sbjct 741 CCATCTTCAAGCTGCTTCCCAGCAAAAATCAACCTTTGTTGGTCAGGTGGGATACCCTCC 682 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTCCACCTCCAC 41820 || | | || | || |||| ||| | | | ||||| ||| ||||||||||| Sbjct 681 TTAT-CTTGGATCTTGGCTTTGACGTTGTCAATTGTGTCAGAGCT---CTCCACCTCCAA 626 Query 41821 CGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || |||||||| |||| ||||| || ||||||||||| Sbjct 625 AGTAATGGTTTTACCAGTCAAGGTCTTCACAAAAATCTGCAT 584 >seq9 Length=8984705 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/222 (71%), Gaps = 10/222 (5%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || || |||| |||||| || | ||| || ||||||||||| | || || | | Sbjct 7046404 AGGCGCAAAACCAAATGCAGGGT--TGATCTTTTGGATGTTATAGTCTGCAAGTGTCCTC 7046347 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || ||||||||||| || ||||| |||| | ||||||||| | || | | |||| Sbjct 7046346 CCATCTTCGAGCTGCTTTCCAGCGAAAATCAACCTCTGTTGGTCAGGTGGGATACCCTCC 7046287 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTCCACCTCCAC 41820 || | | || | || |||| ||| | | | ||||| ||| ||||||||||| Sbjct 7046286 TTAT-CTTGGATCTTGGCTTTGACGTTGTCAATTGTGTCAGAGCT---CTCCACCTCCAA 7046231 Query 41821 CGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || |||||||| |||| || || || ||||||||||| Sbjct 7046230 AGTGATGGTTTTACCAGTCAAGGTTTTCACAAAAATCTGCAT 7046189 Score = 93.3 bits (102), Expect = 4e-14 Identities = 162/231 (70%), Gaps = 10/231 (4%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||||||||||| ||| ||||||||| || || ||||| | Sbjct 7046639 CCACCACGGAGGCGAAGGACCAGATGCAGGGTGGACTCCTTCTGGATATTGTAGTCAGCC 7046580 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || | |||||||| || || |||| | ||| ||||| | ||| Sbjct 7046579 AGAGTGCGACCATCCTCCA-ATGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGA 7046521 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | | |||||||||| ||| | ||||||| || | | | ||||| ||| || Sbjct 7046520 ATCCCCTCCTTGTCC-TGAATCTTTGCTTTCACATTGTCAATCGTGTCTGAGCT----TC 7046466 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||| || || ||||| || |||| ||||| | || |||||||| Sbjct 7046465 AACCTCCAGGGTGATGGTTTTCCCAGTCAAGGTCTTGAAAAATATCTGCAT 7046415 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/223 (70%), Gaps = 12/223 (5%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || || |||| |||||| || |||||| || ||||||||||| | || || | | Sbjct 7053295 AGGCGCAAAACCAAATGCAGGGTTGACTCCTTTTGGATGTTATAGTCTGCAAGTGTCCTC 7053236 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||| || || || |||| | |||||||| | || | | |||| Sbjct 7053235 -CATCTTCAAGCTGCTTCCCAGCAAAAATCAACCTTTGTTGGTCAGGTGGGATAC-CTCC 7053178 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACA--GTGTC---GCTCGACTCCACCTCCA 41819 || || ||| || |||| ||| | || ||||| |||| |||||||||| Sbjct 7053177 TTATCTTGGATCTTG-GCTTTGACGTTGTCAATTGGTGTCAGAGCTC---TCCACCTCCA 7053122 Query 41820 CCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || |||||||| |||| ||||| || ||||||||||| Sbjct 7053121 AAGTAATGGTTTTACCAGTCAAGGTCTTCAC-AAAATCTGCAT 7053080 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || || |||| ||| || || ||||||||||||||||||||| | Sbjct 7052851 GCCACCACGGAGCCGCAAAACCAAATGGAGGGTTGACTCCTTCTGAATGTTATAGTCTGC 7052792 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||| | | || || ||||| || ||||| || || | | ||| ||||| | || Sbjct 7052791 AAGGGTTCTGCCATCTTCAAGCTGTTTTCCGGCAAAAATTAACCTCTGCTGGTCTGGTGG 7052732 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGA--CTCC 41812 | | |||||||||| ||| | || || | || | | | || || | |||| Sbjct 7052731 GATACCCTCCTTGTCC-TGAATCTTCGCCTTCAC-ATTATCGATGGTATCTGAACTCTCC 7052674 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| | || || ||||| || || || || || || || ||||||||| Sbjct 7052673 ACCTCTAAAGTGATGGTTTTCCCAGTGAGAGTTTTCACAAATATCTGCATG 7052623 >seq14 Length=6982396 Score = 93.3 bits (102), Expect = 4e-14 Identities = 163/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || |||||||| | || || || || || ||||||||| ||||| || |||| Sbjct 1120702 CCACCACGTAGACGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCGGCC 1120761 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCC-GCGGG 41754 ||||| | | || ||||||||||| || || || || || | || |||||| | ||| Sbjct 1120762 AGGGTTCTGCCATCCTCGAGCTGCTTCCCAGCAAAGATAAGCCTTTGCTGGTCCGGTGGG 1120821 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | | || ||||||||| ||| || |||| ||| | | | ||||| ||| | Sbjct 1120822 ATCCCT-TCCTTGTCCTGGATCTTGGCCTTC-ACGTTGTCGATCGTGTCAGAACTCTCGA 1120879 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 | |||| ||| || || || || || || ||||| ||||| |||||||| || Sbjct 1120880 CTTCCAGCGTGATTGTCTTGCCGGTGAGTGTCTTAACGAAGATCTGCATCTT 1120931 Score = 89.7 bits (98), Expect = 5e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 41651 AACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCG 41710 || |||| ||| || || ||| |||||||||||||| || | | || || |||| Sbjct 1120033 AAAACCAAATGAAGGGTCGACTCTTTCTGAATGTTATAATCAGCCAAAGTTCGACCGTCC 1120092 Query 41711 TCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770 ||||||||||| || || || || || | || || || | |||| | ||||||||| Sbjct 1120093 TCGAGCTGCTTCCCTGCAAAGATAAGCCTTTGCTGATCTGGCGGAATTCCTTCCTTGTCC 1120152 Query 41771 ATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGT 41829 ||| || |||| ||| | | | |||||| || || |||| ||||| || Sbjct 1120153 TGGATCTTGGCCTTC-ACGTTGTCGATGGTGTCGGAACTTTCAACTTCCAAGGTTATGGT 1120211 Query 41830 TTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||||||||| ||||| || || || ||||| Sbjct 1120212 TTTACCCGTCAGGGTCTTGACAAAGATTTGCAT 1120244 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || |||| ||| | || || || || || |||||| || ||||| || || | Sbjct 1120474 CCACCACGTAAACGGAGGACGAGGTGGAGGGTTGACTCCTTTTGGATGTTGTAATCCGCT 1120533 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||| | |||| ||||||||||| || || || || || | || ||||||| || Sbjct 1120534 AAGGTTCTGCCGTCCTCGAGCTGCTTCCCAGCAAAGATAAGCCTTTGCTGGTCCGGTGGG 1120593 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||||||| ||| || |||| ||| | | | |||||| || || Sbjct 1120594 ATTCCTTCCTTGTCCTGGATCTTGGCCTTC-ACGTTGTCAATGGTGTCGGAGCTTTCGAC 1120652 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| ||||| |||||||||||||| ||||| ||||| || ||||| Sbjct 1120653 TTCCAGGGTTATGGTTTTACCCGTCAGGGTCTTGACGAAGATTTGCAT 1120700 >seq2 Length=14367614 Score = 86.0 bits (94), Expect = 6e-12 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| ||| || ||| ||||||||| ||||||||||| | Sbjct 9074275 CCACCACGGAGACGAAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTATAGTCAGCT 9074216 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || || ||||| ||||| || || || || | |||||||| | || Sbjct 9074215 AGGGTTCGGCCATCTTCAAGCTGTTTGCCAGCAAAAATAAGCCTTTGTTGGTCAGGAGGG 9074156 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCA-ACGACGACACAGTGTC---GCTCGACTC 41811 | | |||||||| ||| || ||| | | | | | |||||| ||| ||| Sbjct 9074155 ATTCCTTCCTTGTCTTGGATCTTAGCCTTGACATTATCA-ATAGTGTCAGAGCT---CTC 9074100 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||| || || || || || || || ||||| || || || ||||| Sbjct 9074099 AACCTCCAAGGTGATAGTCTTTCCTGTGAGAGTCTTGACAAAGATTTGCAT 9074049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462268899568800