Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq3263 104 5e-17 seq1276 104 5e-17 seq1030 104 5e-17 seq687 104 5e-17 seq649 104 5e-17 seq370 104 5e-17 seq132 104 5e-17 seq6 104 5e-17 seq1752 102 2e-16 seq180 102 2e-16 seq214 100 6e-16 seq766 98.7 2e-15 seq908 96.9 7e-15 >seq3263 Length=15895 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 8578 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 8637 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 8638 CCCACGGTGGGC 8649 >seq1276 Length=180580 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 160889 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 160948 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 160949 CCCACGGTGGGC 160960 >seq1030 Length=313933 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 197025 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 197084 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 197085 CCCACGGTGGGC 197096 >seq687 Length=650195 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 248479 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 248420 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 248419 CCCACGGTGGGC 248408 >seq649 Length=700563 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 489798 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 489857 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 489858 CCCACGGTGGGC 489869 >seq370 Length=1163173 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 967635 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 967576 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 967575 CCCACGGTGGGC 967564 >seq132 Length=2062632 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 438425 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 438484 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 438485 CCCACGGTGGGC 438496 >seq6 Length=4471405 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 4433076 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 4433135 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 4433136 CCCACGGTGGGC 4433147 >seq1752 Length=70440 Score = 102 bits (112), Expect = 2e-16 Identities = 165/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 230394 AGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGG 230453 ||| ||||| || | ||| | |||||| | || || || |||||||| ||||| ||| Sbjct 24471 AGACGCAGTGGATATCGAGAGGGAGTTTGTGTGCGATGCGCTTCCATGT-GCCTTGGTGG 24413 Query 230454 C-ATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTG 230512 ||||| | || || ||| | |||||||| || ||||| || || | | || | || Sbjct 24412 GGATGAATGGAGAGCTGATGAGCCAGTACATTGAGTTCGTGGCTGATAGGTTGTTGGGTG 24353 Query 230513 CACTTGGTTACGAGAAAG-TGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATT 230571 | ||||| |||| ||||| | ||||| || || |||| | |||||||| || Sbjct 24352 CGCTTGGGTACG-GAAAGATCTACAATGTGGCTAATCCTTTTGATTGGATGGAGCTGATC 24294 Query 230572 TCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGA 230623 ||||| ||||||||||| || ||||| || ||| | || | || ||||||| Sbjct 24293 TCGCTGCAAGGGAAGACGAATTTCTTTGAGAAGAGAGTTGGAGAGTATCAGA 24242 >seq180 Length=1810540 Score = 102 bits (112), Expect = 2e-16 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 165706 GCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTC 165765 || ||||||||||||||||| |||||||||| || || |||| || |||||||||||||| Sbjct 1515895 GCATGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTC 1515836 Query 165766 GAGCCCCACGATGGGC 165781 |||||||||| ||||| Sbjct 1515835 GAGCCCCACGGTGGGC 1515820 >seq214 Length=1602240 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 489604 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 489545 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 489544 CCCCACGGTGGGC 489532 >seq766 Length=558893 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 380880 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 380939 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 380940 CCCACGGTGGGC 380951 >seq908 Length=420522 Score = 96.9 bits (106), Expect = 7e-15 Identities = 62/68 (91%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 165714 GTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCA 165773 ||||||||||||||||||||||| || || |||| || |||||||||||||||||||||| Sbjct 302476 GTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCA 302535 Query 165774 CGATGGGC 165781 || ||||| Sbjct 302536 CGGTGGGC 302543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057723000286760