Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1752 114 1e-20 >seq1752 Length=70440 Score = 114 bits (126), Expect = 1e-20 Identities = 380/583 (65%), Gaps = 11/583 (2%) Strand=Plus/Plus Query 16960 CAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGT 17019 || ||| ||||| || || || || ||||| |||| ||| | ||||| || ||||| Sbjct 24528 CAAACACGCGAAGTCACAGTGCAAGCCCTCATCTCGCGAGATCAACTCGTTTGAGAATGT 24587 Query 17020 CAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAA 17079 || || |||||| || || ||||||| ||||||||||||| || |||||||| Sbjct 24588 TAATCCCGGCATCAAGCCACGCTTCTTTAGCCAAAATATCGCGCAAAAGCTTCCAGAAAA 24647 Query 17080 GAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTT 17139 ||||| ||||| || | ||||| ||||| | | || || | ||| || Sbjct 24648 AAATATTCCCTCCACACAGGCAAAAGCGATCAGCCTCTCCGCAAAAGTC---TCCGAACC 24704 Query 17140 ACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGC 17199 | ||||| | | ||||||| ||||||| | ||| | || || || || Sbjct 24705 ATCGATCCACCTGAGGGCCCACTCAGCTTTTTTAGCCACACAAGGGACAGTCTCAATTGC 24764 Query 17200 CTTAAATAATTTCTCTTTTTCCTGTAGG--TCGATTATATACGTATCGATGAGTAGGCTG 17257 | ||| || | || ||| || || || | ||||| || || | | || ||| Sbjct 24765 ATGAAACAA--GCGATTCTTCTCGTTGGAATCTTTAATATAAGTCTCCAACAAAAGACTG 24822 Query 17258 TACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTA-AAAGCATCGGGCTTC 17316 ||||| ||||| || || || || || || || || ||||| || |||||| || || || Sbjct 24823 TACATCTCGGAATGGATATTTTCAATAGCGATTTGGAATCCATAGAAAGCA-CGAGCCTC 24881 Query 17317 CGCTATTTGAACTTCC-ACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGC 17375 || | || |||||| | || || ||| | || || |||||| ||||| || ||| Sbjct 24882 AGCAACCTGGACTTCCTTCATA-AAACGTCCAGCGAGGTTTTCGAGAACGATACCATCGG 24940 Query 17376 TCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGC 17435 ||||| || || || | | ||| | | || | ||||| || ||||| || | Sbjct 24941 AGGCGGCAAAGAATGCAAGAACATGGGTGACAAAGTGCTTTTCATCGGGTGTTAGGGCTT 25000 Query 17436 GCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTG 17495 ||||| | ||||| || | ||| || || || | |||||||| ||| | | Sbjct 25001 CCCAGTGGCGGAGATCTTGAGAGAGATCGACCTCCTCAGCAGTCCAAAAGGAGGCCTCGG 25060 Query 17496 CCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 | || |||||||| | ||| || | ||||| || ||||| Sbjct 25061 CTTTCTTATACATTTCCCAGATTTGTGGGTATTCAATTGGGAA 25103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517497390627360