Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq1752 127 2e-24 >seq1752 Length=70440 Score = 127 bits (140), Expect = 2e-24 Identities = 368/558 (66%), Gaps = 9/558 (2%) Strand=Plus/Plus Query 16201 ACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAA 16260 |||||||||||| || || | || || |||| ||| | ||||| || || ||||| Sbjct 24531 ACACGCGAAGTCACAGTGCAAGCCCTCATCTCGCGAGATCAACTCGTTTGAGAATGTTAA 24590 Query 16261 CCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATG-ACCCCGAAAAGA 16319 || ||||| || || ||||||| ||| |||||||| ||||| | || ||||| | Sbjct 24591 TCCCGGCATCAAGCCACGCTTCTTTAGCCAAAATATCGC-GCAAAAGCTTCCAGAAAAAA 24649 Query 16320 ATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTAC 16379 |||| ||||| ||| | ||||||||||| | | ||||| | || || | | Sbjct 24650 ATATTCCCTCCACACAGGCAAAAGCGATCAGCCTCTCCGCAAA---AGTCTCCGAACCAT 24706 Query 16380 GAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCT 16439 ||||| | | |||| || ||||||| | |||| | || || || || | Sbjct 24707 CGATCCACCTGAGGGCCCACTCAGCTTTTTTAGCCACACAAGGGACAGTCTCAATTGCAT 24766 Query 16440 TAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACA 16499 |||||| | || || | ||| | ||||| || || | || | |||||||| Sbjct 24767 GAAACAAGCGATTCTTCTCGTTGGAATCTTTAATATAAGTCTCCAACAAAAGACTGTACA 24826 Query 16500 TTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAG-AAGCATCGAGCCTCCGCT 16558 | || || || || || || || || || || ||||||||| ||||| |||||||| || Sbjct 24827 TCTCGGAATGGATATTTTCAATAGCGATTTGGAATCCATAGAAAGCA-CGAGCCTCAGCA 24885 Query 16559 ATTTGTACTTCC-ACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGC 16617 | || |||||| | ||||| ||| | || ||||| || |||||||| || || Sbjct 24886 ACCTGGACTTCCTTCATAAAA-CGTCCAGCGAGGTTTTCGAGAACGATACCATCGGAGGC 24944 Query 16618 AGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCA 16677 ||||| || || | | || | | || | ||||| || | ||| || | ||| Sbjct 24945 GGCAAAGAATGCAAGAACATGGGTGACAAAGTGCTTTTCATCGGGTGTTAGGGCTTCCCA 25004 Query 16678 ATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTT 16737 | | ||||| || | ||| || || || | ||||||||| ||| | || || Sbjct 25005 GTGGCGGAGATCTTGAGAGAGATCGACCTCCTCAGCAGTCCAAAAGGAGGCCTCGGCTTT 25064 Query 16738 TTTATACATTTTCCAAAT 16755 |||||||||| ||| || Sbjct 25065 CTTATACATTTCCCAGAT 25082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511366761748640