Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq153 93.3 3e-14 seq2791 87.8 1e-12 seq1725 87.8 1e-12 >seq153 Length=1958124 Score = 93.3 bits (102), Expect = 3e-14 Identities = 100/130 (77%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 101756 ACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAAC 101815 |||||||||||||||||||| | | || ||| |||||||||||||| ||||| | Sbjct 333059 ACATGAGCAATCATGCAAGTCAGCAAAGCATAAGATGCAATGTTAAATGGGACTCCAAGA 333118 Query 101816 CCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAAT 101875 ||||||||||| || | ||||||| |||||||| || || |||| |||||||| Sbjct 333119 CCCATATCAGCAGAGCGCTGATACATTTGACAGGTAA-CTCCCCATTGGCCACATAAAAC 333177 Query 101876 TG-ACTTAAT 101884 || | ||||| Sbjct 333178 TGCAATTAAT 333187 >seq2791 Length=22307 Score = 87.8 bits (96), Expect = 1e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 101756 ACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAAC 101815 ||||||||||||||||| || || || | ||| |||||||| |||||||| || | Sbjct 16371 ACATGAGCAATCATGCATGTCAAGAGGGCATAAGATGCAATGTTGAATGGCACACCCAGG 16312 Query 101816 CCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCAT 101861 |||||||| || |||| |||||||| |||||| || | || |||| Sbjct 16311 CCCATATCGGCAGATCGTTGATACATTTGACAAGATAACTCCCCAT 16266 >seq1725 Length=72912 Score = 87.8 bits (96), Expect = 1e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 101756 ACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAAC 101815 ||||||||||||||||| || || || | ||| |||||||| |||||||| || | Sbjct 19841 ACATGAGCAATCATGCATGTCAAGAGGGCATAAGATGCAATGTTGAATGGCACACCCAGG 19782 Query 101816 CCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCAT 101861 |||||||| || |||| |||||||| |||||| || | || |||| Sbjct 19781 CCCATATCGGCAGATCGTTGATACATTTGACAAGATAACTCCCCAT 19736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361218390714452