Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1752 237 2e-57 seq79 102 1e-16 seq755 93.3 5e-14 seq320 84.2 3e-11 >seq1752 Length=70440 Score = 237 bits (262), Expect = 2e-57 Identities = 422/611 (69%), Gaps = 6/611 (1%) Strand=Plus/Plus Query 24131 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 24190 |||||| ||||| || ||||| | ||||| |||| || || ||||| || || || Sbjct 24528 CAAACACGCGAAGTCACAGTGCAAGCCCTCATCTCGCGAGATCAACTCGTTTGAGAATGT 24587 Query 24191 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATG-ATCCAGAAA 24249 | ||| ||||| | ||||||||| || ||||||||||| | |||||| | |||||||| Sbjct 24588 TAATCCCGGCATCAAGCCACGCTTCTTTAGCCAAAATATCG-CGCAAAAGCTTCCAGAAA 24646 Query 24250 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTG--TC 24307 | || ||||| || || ||||| || || || | ||||| || | | | | | Sbjct 24647 AAAATATTCCCTCCACACAGGCAAAAGCGATCAGCC--TCTCCGCAAAAGTCTCCGAACC 24704 Query 24308 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 24367 || |||||| | | ||||| || || || || |||||||| | ||||| || || Sbjct 24705 ATCGATCCACCTGAGGGCCCACTCAGCTTTTTTAGCCACACAAGGGACAGTCTCAATTGC 24764 Query 24368 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 24427 || ||| | || || || || |||||||| ||| || || | ||||||||| || Sbjct 24765 ATGAAACAAGCGATTCTTCTCGTTGGAATCTTTAATATAAGTCTCCAACAAAAGACTGTA 24824 Query 24428 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGT 24487 ||| || ||||| || |||||||| || ||||| ||||| |||||| | |||||| | Sbjct 24825 CATCTCGGAATGGATATTTTCAATAGCGATTTGGAATCCATAGAAAGCACGAGCCTCAGC 24884 Query 24488 AATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGC 24547 || ||| ||||| | ||| ||| | || | ||||| || || || || ||| Sbjct 24885 AACCTGGACTTCCTTCATAAAACGTCCAGCGAGGTTTTCGAGAACGATACCATCGGAGGC 24944 Query 24548 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCA 24607 ||||| || || | ||||| | | ||| | ||||| || |||||||| | ||| Sbjct 24945 GGCAAAGAATGCAAGAACATGGGTGACAAAGTGCTTTTCATCGGGTGTTAGGGCTTCCCA 25004 Query 24608 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 24667 | || ||||| ||| | ||| || || || | |||||||| || ||||| || || Sbjct 25005 GTGGCGGAGATCTTGAGAGAGATCGACCTCCTCAGCAGTCCAAAAGGAGGCCTCGGCTTT 25064 Query 24668 TTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATT 24727 |||||||| | |||||| | | |||| |||||| || ||| || | || || || Sbjct 25065 CTTATACATTTCCCAGATTTGTGGGTATTCAATTGGGAACATACAGAAACGATCTGAGTT 25124 Query 24728 TTTTGCAAGGA 24738 | ||||||| Sbjct 25125 TGGGGCAAGGA 25135 >seq79 Length=2571107 Score = 102 bits (112), Expect = 1e-16 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 ||||| ||||| || | ||| ||||||||||| || |||||| | ||| | | || Sbjct 116813 GTTCCAGCATTGAAAAGGGTGGGAGAAGCGTGTGTGAACCATCGCTGAGACATCAAATGA 116872 Query 54485 TACGTCTCGATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAA 54543 || || || ||| | || || ||||| | ||| |||||||| || || || | ||||| Sbjct 116873 TAGGTTTCAATAACCGAATCAATATCATCCTTG-TGAATTCCAACAGCAACCCTCATTAG 116931 Query 54544 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAA 54603 ||||||||||||||| || || | ||| | | ||| | | |||||| |||||| Sbjct 116932 CATGTGCTGAGGTCTCTCCACAACCTTCCCTTGAACTTTTAAGAGGTAGGACCTTTCCAG 116991 Query 54604 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 || ||||| ||||| || | || ||||| || || ||||| || Sbjct 116992 GGTCTTAAAGCCAAAGTAATCATAGTTGAAGTCCCGATCATAAATGAT 117039 Score = 86.0 bits (94), Expect = 7e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 54184 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 54243 |||||| ||||| | || | || || | ||| | || | ||||| |||| |||||| Sbjct 116399 TCCTCCTTGATCAACATAACGGGCAGTATCATTGAACACCCGTAACATGGGAACAATACC 116458 Query 54244 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 54303 ||| |||| ||||| || || ||||||| ||| | ||||||||||| ||| || Sbjct 116459 ATTAGATGTCCCATTTGTTCCACGAATATAGCCGCCAGTAGCACGAATATTGTGAATAGA 116518 Query 54304 TAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 54363 | || || || || || ||| ||| | || || || || |||||||| || Sbjct 116519 GACGCCAATTCCTCCAGCAGATTTGCTGATAACAGCACACTCCTTCAAAGTATCATATAT 116578 Query 54364 GCCCTCTATACTATCATCCATCATG 54388 ||| || ||||||||||| ||||| Sbjct 116579 GCCTTCAATACTATCATCTTTCATG 116603 >seq755 Length=570705 Score = 93.3 bits (102), Expect = 5e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 ||||| |||||||| | ||| || || || || || |||||| || ||| | | || | Sbjct 116815 GTTCCAGCATTAAAAAGGGTGGGCGATGCATGAGTGAACCATCGTTGAGACATCAAATGG 116874 Query 54485 TACGTCTCGATAGCTGAGTCTATATC--CCATTGATGAATTCCTACTGCGACACGCATTA 54542 || || | |||| | || || ||||| |||| |||||||| || || || | ||| | Sbjct 116875 TAGGTTTTGATAACAGAATCAATATCATCCATG--TGAATTCCAACAGCAACTCTCATCA 116932 Query 54543 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCA 54602 ||||||||||||||| || || | ||| | | ||| | | ||||| ||||| Sbjct 116933 GCATGTGCTGAGGTCTCTCTACTACCTTCCCTTGCACTTTTAAGAGATAGGACCGTTCCA 116992 Query 54603 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 | || || || ||||| || | || |||||| || || ||||| || Sbjct 116993 AGGTCTTGAAGCCAAAGTAATCATAGTCAAAGTCCCGATCATAAATGAT 117041 Score = 91.5 bits (100), Expect = 2e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 54184 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 54243 |||||| ||||| | || | || || | ||| | || | ||||| |||| ||| || Sbjct 116405 TCCTCCTTGATCAACATACCGTGCAGTATCATTGAACACACGTAACATGGGAACAATGCC 116464 Query 54244 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 54303 ||| |||| ||||| || || ||||| || ||| | ||||||||||| || || Sbjct 116465 ATTAGATGTCCCATTTGTTCCACGAATATAACTACCAGTAGCACGAATATTGTGAACGGA 116524 Query 54304 TAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 54363 | ||| || || ||||| |||| ||| | || || || || |||||||| || Sbjct 116525 GACACCAATTCCTCCTGCAGATTTACTGATAACAGCACACTCCTTCAAAGTATCATATAT 116584 Query 54364 GCCCTCTATACTATCATCCATCATG 54388 ||| || ||||||||||| ||||| Sbjct 116585 GCCTTCAATACTATCATCTTTCATG 116609 >seq320 Length=1281786 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/153 (73%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 53942 TACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACAC 54001 ||||| |||||| | ||||||||| || |||| || ||| ||||| || || Sbjct 81233 TACAAATTTTCAAATTTTTCTCCCCAACAATCAGCCAAACCGGGAGCTTCATTGGGGCAA 81292 Query 54002 ATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 54061 | ||| ||||| || ||| | |||| || ||||||||||||||||||||| ||| Sbjct 81293 AACAAAGACCAGCTGCCATCACCTCGGACTCTTTCCATAAAGAGATCAGGAATCCAGAGA 81352 Query 54062 GCTATA-AATAGATCTCTGGTTCTATGTTCCTC 54093 || ||| |||| |||||| | || |||||| || Sbjct 81353 GC-ATAGAATAAATCTCTTGCTCGATGTTCTTC 81384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593666294832960