Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq765 95.1 1e-14 seq629 86.0 5e-12 seq166 84.2 2e-11 seq887 82.4 7e-11 >seq765 Length=559349 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||| ||||| | ||| ||| || ||||| || |||||||| || ||||| || || Sbjct 186606 GATAAGGAAGGGATTCCCCCAGACCAGCAAAGGCTCATCTTTGCTGGAAAACAGCTCGAG 186665 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 || ||| |||||||||| |||||||||||||||||||| |||||| | ||| | Sbjct 186666 GACGGTCGCACTTTGGCCGATTATAATATTCAGAAGGAATCTACCCTTCACCTCGTGCTC 186725 Query 29175 CGATTACGAGGAGGG 29189 || | || |||||| Sbjct 186726 CGTCTGCGTGGAGGG 186740 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGA-ACCCGC 29020 ||||| || ||| | || || ||||| || ||||| |||||| ||| ||| | | || Sbjct 186741 ATGCAGATTTTCGTTAAGACCTTGACTGGAAAAACTATTACCCTCGAGGTGGAGAGCAGC 186800 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || | ||| |||||| || || || ||| | || ||| || Sbjct 186801 -GACACTATTGATAATGTCAAGGCAAAAATACAGGACAAGGAGGGTATCCCACCAGACCA 186859 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 || || || ||||| || || ||||| ||||||||| | ||| |||| |||||||| Sbjct 186860 GCAGAGGCTGATCTTCGCTGGGAAACAGCTGGAAGATGGCCGGACTTTGGCTGATTACAA 186919 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189 |||||||||||||| ||||| ||| | ||| | | | || |||||| Sbjct 186920 CATTCAGAAGGAATCCACTCTCCACCTTGTGCTCAGGCTTCGTGGAGGG 186968 >seq629 Length=730630 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGA-ACCCGC 29020 ||||| || ||| | ||||| ||||| ||||| || ||||| |||| || | | || Sbjct 101975 ATGCAGATCTTCGTGAAAACCTTGACCGGCAAGACTATTACTCTCGAAGTCGAGAGCAGC 102034 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | | || | ||| || ||| ||||| ||||| | || ||| || Sbjct 102035 -GACACCATCGACAATGTCAAGGCTAAGATTCAGGATAAGGAAGGAATTCCTCCAGACCA 102093 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||||| || |||||||| || || || || || || || |||||||||| || Sbjct 102094 GCAAAGGCTCATCTTTGCTGGGAAGCAGCTCGAGGACGGTCGCACCTTGGCCGATTATAA 102153 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189 |||||||||||| ||||| ||||| | ||| | || | || |||||| Sbjct 102154 TATTCAGAAGGAGTCTACCCTTCATCTTGTGCTTCGTCTGCGTGGAGGG 102202 >seq166 Length=1910501 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 29075 AGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGA 29134 ||| || || || | || ||||| ||||| ||||| || ||| | ||| |||| || Sbjct 30265 AGACCAGCAGAGGTTGATTTTTGCTGGCAAGCAACTTGAGGATGGGAGAACATTGGCTGA 30324 Query 29135 TTACAATATTCAGAAGGAATCTACTCTTCACATGGT 29170 |||||||||||||||||||||||| |||||| |||| Sbjct 30325 TTACAATATTCAGAAGGAATCTACCCTTCACTTGGT 30360 >seq887 Length=435773 Score = 82.4 bits (90), Expect = 7e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||| ||||| | || || || || || || |||||||| || || ||||| || Sbjct 324415 GATAAGGAAGGGATCCCACCTGACCAGCAGAGGCTCATCTTTGCTGGAAAGCAACTTGAG 324356 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| | || ||||||||||||| || ||||||||||| ||||||||| ||||| | Sbjct 324355 GATGGCCGTACACTGGCCGATTACAACATCCAGAAGGAATCCACTCTTCACTTGGTGCTT 324296 Query 29175 CGATT 29179 || || Sbjct 324295 CGTTT 324291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428297097989060