Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq765 86.0 5e-12 seq629 86.0 5e-12 seq1022 84.2 2e-11 >seq765 Length=559349 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||| ||||| | ||| ||| || ||||| || |||||||| || ||||| | || Sbjct 186606 GATAAGGAAGGGATTCCCCCAGACCAGCAAAGGCTCATCTTTGCTGGAAAACAGCTCGAG 186665 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 || ||| |||||||||| |||||||| ||||||||||| |||||| | ||| | Sbjct 186666 GACGGTCGCACTTTGGCCGATTATAATATTCAGAAGGAATCTACCCTTCACCTCGTGCTC 186725 Query 25248 CGATTACGAGGAGGG 25262 || | || |||||| Sbjct 186726 CGTCTGCGTGGAGGG 186740 >seq629 Length=730630 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGA-ACCCGC 25093 |||||||| ||| | || || ||||| || ||||| |||||| || ||| | | || Sbjct 102203 ATGCAAATTTTCGTTAAGACGTTGACTGGGAAAACTATTACCTTGGAGGTGGAGAGCAGC 102262 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | | ||||| ||||||| || || || || | || ||| || Sbjct 102263 -GACACCATTGATAACGTCAAGGCAAAAATTCAGGACAAGGAGGGAATCCCACCAGACCA 102321 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 || || || ||||| || || || || |||||||| | ||| |||| |||||||| Sbjct 102322 GCAGAGGCTGATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGGACTTTGGCTGATTACAA 102381 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTG 25244 |||||| |||||||| ||||| ||| | ||| Sbjct 102382 TATTCAGAAGGAATCCACTCTCCACCTTGTG 102412 >seq1022 Length=319891 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208 ||||| || ||| | || ||||| || ||||||||||||||| | ||| |||| ||| Sbjct 175617 GATCAGCAGAGATTGATTTTTGCTGGTAAACAATTGGAAGATGGTAGAACCCTGGCTGAT 175676 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||||| || || ||||| || ||||||||| |||| ||| Sbjct 175677 TACAACATCCAGAAGGAGTCAACTCTTCACCTGGTTTTA 175715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410759490921128